Remove completion handler + add emits

pditommaso · pditommaso · commit 27ff768e25b0 · 2024-05-18T16:52:01.000+02:00
Signed-off-by: Paolo Di Tommaso &lt;paolo.ditommaso@gmail.com&gt;
diff --git a/main.nf b/main.nf
@@ -56,9 +56,3 @@ workflow {
   MULTIQC( RNASEQ.out, params.multiqc )
 }
 
-/* 
- * completion handler
- */
-workflow.onComplete {
-	log.info ( workflow.success ? "\nDone! Open the following report in your browser --> $params.outdir/multiqc_report.html\n" : "Oops .. something went wrong" )
-}
diff --git a/modules/fastqc/main.nf b/modules/fastqc/main.nf
@@ -9,7 +9,7 @@ process FASTQC {
     tuple val(sample_id), path(reads)
 
     output:
-    path "fastqc_${sample_id}_logs" 
+    path "fastqc_${sample_id}_logs", emit: logs
 
     script:
     """
diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf
@@ -9,7 +9,7 @@ process MULTIQC {
     path(config) 
 
     output:
-    path('multiqc_report.html')
+    path('multiqc_report.html'), emit: report
 
     script:
     """

Original file line number	Diff line number	Diff line change
`@@ -56,9 +56,3 @@ workflow {`
`56`	`56`	`MULTIQC( RNASEQ.out, params.multiqc )`
`57`	`57`	`}`
`58`	`58`
`59`		`-/*`
`60`		`- * completion handler`
`61`		`- */`
`62`		`-workflow.onComplete {`
`63`		`- log.info ( workflow.success ? "\nDone! Open the following report in your browser --> $params.outdir/multiqc_report.html\n" : "Oops .. something went wrong" )`
`64`		`-}`