Remove params.outdir in favor of outputDir

Signed-off-by: Ben Sherman <[email protected]>

Author: bentsherman

nextflow.config

@@ -16,15 +16,9 @@ manifest {
   nextflowVersion = '>=23.10.0'
 }
 
-/*
- * config params
- */
-params.outdir = 'results'
-
 /*
  * configure outputs publishing
  */
-outputDir = params.outdir
 workflow.output.mode = 'copy'
 
 /*

nextflow_schema.json

@@ -11,13 +11,6 @@
       "fa_icon": "fas fa-terminal",
       "description": "Define where the pipeline should find input data and save output data.",
       "properties": {
-        "outdir": {
-          "type": "string",
-          "format": "directory-path",
-          "description": "The output directory where the results will be saved. You have to use absolute paths to storage on Cloud infrastructure.",
-          "fa_icon": "fas fa-folder-open",
-          "default": "results"
-        },
         "reads": {
           "type": "string",
           "description": "The input read-pair files",