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docs/hello_nextflow/index.md

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**Prerequisites**
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- A GitHub account OR a local installation as described [here](envsetup/02_local).
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- A GitHub account OR a local installation as described [here](../envsetup/02_local).
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- Experience with command line and basic scripting

docs/nf4_science/genomics/index.md

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# Nextflow for Genomics
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This training course is intended for researchers in genomics and related fields who are interested in developing or customizing data analysis pipelines.
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It builds on the [Hello Nextflow](../hello_nextflow/) beginner training and demonstrates how to use Nextflow in the specific context of the genomics domain.
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It builds on the [Hello Nextflow](../../hello_nextflow/) beginner training and demonstrates how to use Nextflow in the specific context of the genomics domain.
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Specifically, this course demonstrates how to implement a simple variant calling pipeline with [GATK](https://gatk.broadinstitute.org/) (Genome Analysis Toolkit), a widely used software package for analyzing high-throughput sequencing data.
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- Tools and file formats commonly used in this scientific domain
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- Experience with the command line
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- Foundational Nextflow concepts and tooling covered in the [Hello Nextflow](../hello_nextflow/) beginner training.
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- Foundational Nextflow concepts and tooling covered in the [Hello Nextflow](../../hello_nextflow/) beginner training.
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For technical requirements and environment setup, see the [Environment Setup](../envsetup/) mini-course.
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For technical requirements and environment setup, see the [Environment Setup](../../envsetup/) mini-course.
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## Get started
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