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docs/side_quests/nf-core.md

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@@ -1177,7 +1177,9 @@ If we use the samplesheet with the `sequencer` set, only one sample will be trim
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```console
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nextflow run . -profile docker,test --outdir results --input ../../data/sequencer_samplesheet.csv -resume
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```
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```console
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[47/fdf9de] process > MYORG_MYFIRSTPIPELINE:MYFIRSTPIPELINE:SEQTK_TRIM (SAMPLE2_PE) [100%] 1 of 1 ✔
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[2a/a742ae] process > MYORG_MYFIRSTPIPELINE:MYFIRSTPIPELINE:MULTIQC [100%] 1 of 1 ✔
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```
@@ -1216,9 +1218,9 @@ nf-core modules create
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It will ask you to enter the tool name and some configurations for the module. We will use the defaults here:
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- Specify the tool name: `Name of tool/subtool: fastqe`
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- Add the author name: `GitHub Username: (@<your-name>):`
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- Accept the defaults for the remaining prompts by typing `enter`
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- Specify the tool name: `Name of tool/subtool: fastqe`
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- Add the author name: `GitHub Username: (@<your-name>):`
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- Accept the defaults for the remaining prompts by typing `enter`
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This will create a new file in `modules/local/fastqe.nf` that already contains the container and conda definitions, the general structure of the process, and a number of TODO statements to guide you through the adaptation.
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