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Copy file name to clipboardExpand all lines: docs/hello_nextflow/00_orientation.md
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@@ -5,14 +5,31 @@ However, you do need a (free) account to log in, and you should take a few minut
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If you have not yet done so, please follow [this link](../../envsetup/) before going any further.
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## Materials provided
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## Working directory
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Throughout this training course, we'll be working in the `hello-nextflow/` directory.
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Change directory now by running this command in the terminal:
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```bash
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cd hello-nextflow/
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```
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Throughout this training course, we'll be working in the `hello-nextflow/` directory, which you can load by typing `code hello-nextflow/` in the terminal when you open the training workspace.
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Otherwise you can change directory and go into this folder with `cd hello-nextflow/`.
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This directory contains all the code files, test data and accessory files you will need.
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!!!tip
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If for whatever reason you move out of this directory, you can always use the full path to return to it, assuming you're running this within the Github Codespaces training environment:
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```bash
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cd /workspaces/training/hello-nextflow
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```
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Feel free to explore the contents of this directory; the easiest way to do so is to use the file explorer on the left-hand side of the training workspace.
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Now let's have a look at the contents of this directory.
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## Materials provided
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You can explore the contents of this directory by using the file explorer on the left-hand side of the training workspace.
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Alternatively, you can use the `tree` command.
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Throughout the course, we use the output of `tree` to represent directory structure and contents in a readable form, sometimes with minor modifications for clarity.
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Here we generate a table of contents to the second level down:
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The name and number in the filename correspond to the step of the relevant part of the course.
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For example, the file `hello-world-4.nf` is the expected result of completing steps 1 through 4 of Part 1: Hello World.
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!!!tip
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If for whatever reason you move out of this directory, you can always run this command to return to it (within the training environment):
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```bash
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cd /workspaces/training/hello-nextflow
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```
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Now, to begin the course, click on the arrow in the bottom right corner of this page.
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**Now, to begin the course, click on the arrow in the bottom right corner of this page.**
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