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Finetune admonitions
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docs/envsetup/index.md

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For more detailed instructions for GitHub Codespaces, see the [GitHub Codespaces env-setup docs](01_setup.md).
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If you cannot use GitHub Codespaces and wish to use a local development environment, see the [documentation for local installation](02_local.md).
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!!! note
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!!! info "Deprecation of GitPod"
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Nextflow Training used to use [Gitpod](https://gitpod.io) until February 2025.
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However, the makers of Gitpod have decided to retire the free functionality in favor of their new [Gitpod Flex](https://www.gitpod.io/blog/introducing-gitpod-flex) system.

docs/index.md

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!!! exercise "Environment Setup"
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!!! tip inline end ""
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:material-lightbulb: Set up your environment for the first time.
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!!! exercise "Hello Nextflow"
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!!! tip inline end ""
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:material-run-fast: Learn to develop pipelines in Nextflow.
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This is a course for newcomers who wish to learn how to develop their own pipelines. The course covers the core components of the Nextflow language in enough detail to enable developing simple but fully functional pipelines. It also covers key elements of pipeline design, development and configuration practices.
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[Launch the Hello Nextflow training :material-arrow-right:](hello_nextflow/index.md){ .md-button .md-button--primary }
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**Coming soon:** "Nextflow Run" — Learn to run Nextflow pipelines (run only, no code development)
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!!! info ""
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**Coming soon:** "Nextflow Run" — Learn to run Nextflow pipelines (run only, no code development)
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<!-- COMMENTED OUT UNTIL THIS IS READY
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!!! exercise "Nextflow Run"
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!!! tip inline end ""
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:material-run-fast: Learn to run Nextflow pipelines.
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!!! exercise "Nextflow for Genomics"
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!!! tip inline end ""
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:material-run-fast: Learn to develop a pipeline for genomics in Nextflow.
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This is a course for researchers who wish to learn how to develop their own genomics pipelines. The course uses a variant calling use case to demonstrate how to develop a simple but functional genomics pipeline.
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[Launch the Nextflow for Genomics training :material-arrow-right:](nf4_science/genomics/){ .md-button .md-button--primary }
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**Coming soon:** "Nextflow for RNAseq" — Learn to develop a pipeline for bulk RNAseq analysis in Nextflow
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!!! info ""
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**Coming soon:** "Nextflow for RNAseq" — Learn to develop a pipeline for bulk RNAseq analysis in Nextflow
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<!-- COMMENTED OUT UNTIL THIS IS READY
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!!! exercise "Nextflow for RNAseq"
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!!! tip inline end ""
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:material-run-fast: Learn to develop a pipeline for bulk RNAseq analysis in Nextflow.
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<!-- COMMENTED OUT UNTIL THE FIRST ONE IS READY
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!!! exercise "Side Quests"
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:material-run-fast: Training modules for a variety of topics of interest.
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!!! exercise "Fundamentals Training"
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:material-lightbulb: Comprehensive training material for exploring the full scope of Nextflow's capabilities.
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