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Merge pull request #383 from nextflow-io/pinin4fjords-patch-1
Be more explicit in the conda env creation, be consistent with Seqera Containers/ Biocontainers
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docs/basic_training/containers.md

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@@ -613,8 +613,8 @@ Contrary to other registries that will pull the latest image when no tag (versio
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You can also install `galaxy-util-tools` and search for _mulled_ containers in your CLI. You'll find instructions below, using conda to install the tool.
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```bash
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conda activate a-conda-env-you-already-have
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conda install galaxy-tool-util
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conda create -n galaxy-tool-util -y galaxy-tool-util # Create a new environment with 'galaxy-tool-util' installed
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conda activate galaxy-tool-util
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mulled-search --destination quay singularity --channel bioconda --search bowtie samtools | grep mulled
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```
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!!! question "Exercise"
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The tools `fastqc` and `salmon` are both available in Seqera Containers (`community.wave.seqera.io/library/fastqc:0.12.1--5cfd0f3cb6760c42` and `community.wave.seqera.io/library/salmon:1.10.3--482593b6cd04c9b7`, respectively). Add the appropriate `container` directives to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf` to use Seqera Containers instead of the container image you have been using in this training.
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The tools `fastqc` and `salmon` are both available in Biocontainers (`biocontainers/fastqc:v0.11.5` and `quay.io/biocontainers/salmon:1.7.0--h84f40af_0`, respectively). Add the appropriate `container` directives to the `FASTQC` and `QUANTIFICATION` processes in `script5.nf` to use Seqera Containers instead of the container image you have been using in this training.
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!!! tip "Hint"
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