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Fix last multi-channel outputs without emit
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docs/hello_nextflow/05_hello_operators.md

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@@ -331,16 +331,16 @@ _Before:_
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```groovy title="hello-operators.nf" linenums="52"
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output:
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path "${input_bam}.vcf"
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path "${input_bam}.vcf.idx"
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path "${input_bam}.vcf" , emit: vcf
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path "${input_bam}.vcf.idx" , emit: idx
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```
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_After:_
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```groovy title="hello-operators.nf" linenums="52"
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output:
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path "${input_bam}.g.vcf"
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path "${input_bam}.g.vcf.idx"
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path "${input_bam}.g.vcf" , emit: vcf
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path "${input_bam}.g.vcf.idx" , emit: idx
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```
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### 1.3. Run the pipeline again
@@ -773,8 +773,8 @@ _After:_
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```groovy title="hello-operators.nf" linenums="87"
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output:
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path "${cohort_name}.joint.vcf"
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path "${cohort_name}.joint.vcf.idx"
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path "${cohort_name}.joint.vcf" , emit: vcf
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path "${cohort_name}.joint.vcf.idx" , emit: idx
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```
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We're almost done!

docs/hello_nextflow/07_hello_modules.md

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@@ -331,8 +331,8 @@ process GATK_JOINTGENOTYPING {
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path ref_dict
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output:
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path "${cohort_name}.joint.vcf"
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path "${cohort_name}.joint.vcf.idx"
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path "${cohort_name}.joint.vcf" , emit: vcf
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path "${cohort_name}.joint.vcf.idx" , emit: idx
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script:
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def gvcfs_line = all_gvcfs.collect { gvcf -> "-V ${gvcf}" }.join(' ')

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