Bump docs 20.10.0

Author: pditommaso

assets/docs/latest/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: a0f65b699793b5f604c9b2e87fef2ccb
+config: 41c5d50fca96e9aee9092129b6bc013c
 tags: 645f666f9bcd5a90fca523b33c5a78b7

assets/docs/latest/_sources/config.rst.txt

@@ -414,6 +414,7 @@ Name                Description
 ================== ================
 author              Project author name (use a comma to separate multiple names).
 defaultBranch       Git repository default branch (default: ``master``).
+recurseSubmodules   Turn this flag to ``true`` to pull submodules recursively from the Git repository
 description         Free text describing the workflow project.
 doi                 Project related publication DOI identifier.
 homePage            Project home page URL.
@@ -809,6 +810,8 @@ NXF_OFFLINE                 When ``true`` disables the project automatic downloa
 NXF_CLOUD_DRIVER            Defines the default cloud driver to be used if not specified in the config file or as command line option, either ``aws`` or ``google``.
 NXF_ANSI_LOG                Enables/disables ANSI console output (default ``true`` when ANSI terminal is detected).
 NXF_ANSI_SUMMARY            Enables/disables ANSI completion summary: `true|false` (default: print summary if execution last more than 1 minute).
+NXF_SCM_FILE                Defines the path location of the SCM config file (requires version ``20.10.0`` or later).
+NXF_PARAMS_FILE             Defines the path location of the pipeline parameters file (requires version ``20.10.0`` or later).
 JAVA_HOME                   Defines the path location of the Java VM installation used to run Nextflow.
 JAVA_CMD                    Defines the path location of the Java binary command used to launch Nextflow.
 HTTP_PROXY                  Defines the HTTP proxy server

assets/docs/latest/_sources/getstarted.rst.txt

@@ -10,7 +10,7 @@ Requirements
 ============
 
 `Nextflow` can be used on any POSIX compatible system (Linux, OS X, etc).
-It requires Bash 3.2 (or later) and `Java 8 (or later, up to 11) <http://www.oracle.com/technetwork/java/javase/downloads/index.html>`_ to be installed.
+It requires Bash 3.2 (or later) and `Java 8 (or later, up to 15) <http://www.oracle.com/technetwork/java/javase/downloads/index.html>`_ to be installed.
 
 For the execution in a cluster of computers the use a shared file system is required to allow
 the sharing of tasks input/output files.

assets/docs/latest/_sources/index.rst.txt

@@ -35,4 +35,3 @@ Contents:
    sharing
    metadata
    mail
-   example

assets/docs/latest/_sources/operator.rst.txt

@@ -1749,6 +1749,9 @@ To create a multi-map criteria as variable that can be passed as an argument to
 into
 ----
 
+.. warning::
+    The ``into`` operator is not available when using Nextflow DSL2 syntax.
+
 The ``into`` operator connects a source channel to two or more target channels in such a way the values emitted by
 the source channel are copied to the target channels. For example::
 
@@ -1799,18 +1802,26 @@ The ``tap`` can be useful in certain scenarios where you may be required to conc
 as in the following example::
 
 
-    log1 = Channel.create().view { "Log 1: $it" }
-    log2 = Channel.create().view { "Log 2: $it" }
+    log1 = Channel.create()
+    log2 = Channel.create()
 
     Channel
-        .from ( 'a', 'b', 'c' )
-  	    .tap( log1 )
-  	    .map { it * 2 }
-  	    .tap( log2 )
-  	    .view { "Result: $it" }
+        .of ( 'a', 'b', 'c' )
+        .tap ( log1 )
+        .map { it * 2 }
+        .tap ( log2 )
+        .map { it.toUpperCase() }
+        .view { "Result: $it" }
+
+    log1.view { "Log 1: $it" }
+    log2.view { "Log 2: $it" }
 
 ::
 
+    Result: AA
+    Result: BB
+    Result: CC
+
     Log 1: a
     Log 1: b
     Log 1: c
@@ -1819,22 +1830,19 @@ as in the following example::
     Log 2: bb
     Log 2: cc
 
-    Result: aa
-    Result: bb
-    Result: cc
 
 The ``tap`` operator also allows the target channel to be specified by using a closure. The advantage of this syntax
 is that you won't need to previously create the target channel, because it is created implicitly by the operator itself.
 
 Using the closure syntax the above example can be rewritten as shown below::
 
     Channel
-        .from ( 'a', 'b', 'c' )
-  	    .tap { log1 }
-  	    .map { it * 2 }
-  	    .tap { log2 }
-  	    .view { "Result: $it" }
-
+        .of ( 'a', 'b', 'c' )
+        .tap { log1 }
+        .map { it * 2 }
+        .tap { log2 }
+        .map { it.toUpperCase() }
+        .view { "Result: $it" }
 
     log1.view { "Log 1: $it" }
     log2.view { "Log 2: $it" }
@@ -1846,7 +1854,7 @@ See also `into`_ and `separate`_ operators.
 separate
 --------
 
-.. warning:: The `separate` operator has been deprecated. Use `multiMap`_ instead.
+.. warning:: The ``separate`` operator has been deprecated. Use `multiMap`_ instead.
 
 The ``separate`` operator lets you copy the items emitted by the source channel into multiple 
 channels, which each of these can receive a `separate` version of the same item. 
@@ -2242,7 +2250,7 @@ print
 ------
 
 .. warning::
-  The ``print`` operator is deprecated and not supported any more when using DLS2 syntax. Use
+  The ``print`` operator is deprecated and not supported any more when using DSL2 syntax. Use
   `view`_ instead.
 
 The ``print`` operator prints the items emitted by a channel to the standard output.
@@ -2265,7 +2273,7 @@ println
 --------
 
 .. warning::
-  The ``println`` operator is deprecated and not supported any more when using DLS2 syntax. Use
+  The ``println`` operator is deprecated and not supported any more when using DSL2 syntax. Use
   `view`_ instead.
 
 The ``println`` operator prints the items emitted by a channel to the console standard output appending

assets/docs/latest/_sources/sharing.rst.txt

@@ -160,6 +160,9 @@ Downloaded pipelines can be deleted by using the ``drop`` command, as shown belo
 
     nextflow drop nextflow-io/hello
 
+
+.. _sharing-scm-file:
+
 SCM configuration file
 =======================
 
@@ -196,6 +199,9 @@ token               Private API access token (used only when the specified platf
 
 The attributes marked with a * are only required when defining the configuration of a private SCM server.
 
+.. tip::
+  A custom location for the SCM file can be specified using the ``NXF_SCM_FILE`` environment variable (requires
+ version ``20.10.0`` or later).
 
 BitBucket credentials
 ---------------------

assets/docs/latest/_static/documentation_options.js

@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '20.07.1',
+    VERSION: '20.10.0',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

assets/docs/latest/amazons3.html

@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Amazon S3 storage &mdash; Nextflow 20.07.1 documentation</title>
+  <title>Amazon S3 storage &mdash; Nextflow 20.10.0 documentation</title>
 
 
 
@@ -116,7 +116,6 @@
 <li class="toctree-l1"><a class="reference internal" href="sharing.html">Pipeline sharing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="metadata.html">Workflow introspection</a></li>
 <li class="toctree-l1"><a class="reference internal" href="mail.html">Mail &amp; Notifications</a></li>
-<li class="toctree-l1"><a class="reference internal" href="example.html">Examples</a></li>
 </ul>
 
 

assets/docs/latest/awscloud.html

@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Amazon Cloud &mdash; Nextflow 20.07.1 documentation</title>
+  <title>Amazon Cloud &mdash; Nextflow 20.10.0 documentation</title>
 
 
 
@@ -122,7 +122,6 @@
 <li class="toctree-l1"><a class="reference internal" href="sharing.html">Pipeline sharing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="metadata.html">Workflow introspection</a></li>
 <li class="toctree-l1"><a class="reference internal" href="mail.html">Mail &amp; Notifications</a></li>
-<li class="toctree-l1"><a class="reference internal" href="example.html">Examples</a></li>
 </ul>
 
 

assets/docs/latest/basic.html

@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Basic concepts &mdash; Nextflow 20.07.1 documentation</title>
+  <title>Basic concepts &mdash; Nextflow 20.10.0 documentation</title>
 
 
 
@@ -113,7 +113,6 @@
 <li class="toctree-l1"><a class="reference internal" href="sharing.html">Pipeline sharing</a></li>
 <li class="toctree-l1"><a class="reference internal" href="metadata.html">Workflow introspection</a></li>
 <li class="toctree-l1"><a class="reference internal" href="mail.html">Mail &amp; Notifications</a></li>
-<li class="toctree-l1"><a class="reference internal" href="example.html">Examples</a></li>
 </ul>