Update edge docs to 20.08.0-edge

Author: pditommaso

assets/docs/edge/.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: e728c08ca6f64c043191430e4f2e3739
+config: 0a7bb7bf0a57468e68f6cd8b44a6b665
 tags: 645f666f9bcd5a90fca523b33c5a78b7

assets/docs/edge/_sources/channel.rst.txt

@@ -340,7 +340,7 @@ pair and the second element is the list of files (sorted in lexicographical orde
 
     Channel
         .fromFilePairs('/my/data/SRR*_{1,2}.fastq')
-        .println()
+        .view()
 
 It will produce an output similar to the following::
 
@@ -361,7 +361,7 @@ For example::
 
     Channel
         .fromFilePairs('/some/data/*', size: -1) { file -> file.extension }
-        .println { ext, files -> "Files with the extension $ext are $files" }
+        .view { ext, files -> "Files with the extension $ext are $files" }
 
 
 Table of optional parameters available:
@@ -395,7 +395,7 @@ the FASTQ files matching the specified criteria i.e project or accession number(
 
     Channel
         .fromSRA('SRP043510')
-        .println()
+        .view()
 
 
 It returns::
@@ -413,7 +413,7 @@ Multiple accession IDs can be specified using a list object::
     ids = ['ERR908507', 'ERR908506', 'ERR908505']
     Channel
         .fromSRA(ids)
-        .println()
+        .view()
 
 ::
 

assets/docs/edge/_sources/config.rst.txt

@@ -810,6 +810,7 @@ NXF_OFFLINE                 When ``true`` disables the project automatic downloa
 NXF_CLOUD_DRIVER            Defines the default cloud driver to be used if not specified in the config file or as command line option, either ``aws`` or ``google``.
 NXF_ANSI_LOG                Enables/disables ANSI console output (default ``true`` when ANSI terminal is detected).
 NXF_ANSI_SUMMARY            Enables/disables ANSI completion summary: `true|false` (default: print summary if execution last more than 1 minute).
+NXF_SCM_FILE                Defines the path location of the SCM config file (requires version ``20.10.0`` or later).
 JAVA_HOME                   Defines the path location of the Java VM installation used to run Nextflow.
 JAVA_CMD                    Defines the path location of the Java binary command used to launch Nextflow.
 HTTP_PROXY                  Defines the HTTP proxy server

assets/docs/edge/_sources/getstarted.rst.txt

@@ -10,7 +10,7 @@ Requirements
 ============
 
 `Nextflow` can be used on any POSIX compatible system (Linux, OS X, etc).
-It requires Bash 3.2 (or later) and `Java 8 (or later, up to 11) <http://www.oracle.com/technetwork/java/javase/downloads/index.html>`_ to be installed.
+It requires Bash 3.2 (or later) and `Java 8 (or later, up to 14) <http://www.oracle.com/technetwork/java/javase/downloads/index.html>`_ to be installed.
 
 For the execution in a cluster of computers the use a shared file system is required to allow
 the sharing of tasks input/output files.

assets/docs/edge/_sources/process.rst.txt

@@ -934,7 +934,7 @@ this is a value which has been defined in the `input` declaration block, as show
 
    }
 
-   receiver.println { "Received: $it" }
+   receiver.view { "Received: $it" }
 
 
 Valid output values are value literals, input values identifiers, variables accessible in the process scope and

assets/docs/edge/_sources/sharing.rst.txt

@@ -160,6 +160,9 @@ Downloaded pipelines can be deleted by using the ``drop`` command, as shown belo
 
     nextflow drop nextflow-io/hello
 
+
+.. _sharing-scm-file:
+
 SCM configuration file
 =======================
 
@@ -196,6 +199,9 @@ token               Private API access token (used only when the specified platf
 
 The attributes marked with a * are only required when defining the configuration of a private SCM server.
 
+.. tip::
+  A custom location for the SCM file can be specified using the ``NXF_SCM_FILE`` environment variable (requires
+ version ``20.10.0`` or later).
 
 BitBucket credentials
 ---------------------

assets/docs/edge/_static/documentation_options.js

@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '20.08.0-SNAPSHOT',
+    VERSION: '20.08.0-edge',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',

assets/docs/edge/amazons3.html

@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Amazon S3 storage &mdash; Nextflow 20.08.0-SNAPSHOT documentation</title>
+  <title>Amazon S3 storage &mdash; Nextflow 20.08.0-edge documentation</title>
 
 
 
@@ -272,7 +272,7 @@ <h2>Advanced configuration<a class="headerlink" href="#advanced-configuration" t
   <div role="contentinfo">
     <p>
 
-        &copy; Copyright 2013-2019, Centre for Genomic Regulation (CRG). 2020, Seqera Labs.
+        &copy; Copyright 2020, Seqera Labs. 2013-2019, Centre for Genomic Regulation (CRG).
 
     </p>
   </div>
@@ -304,6 +304,18 @@ <h2>Advanced configuration<a class="headerlink" href="#advanced-configuration" t
 
 
 
+    <!-- Theme Analytics -->
+    <script>
+    (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+      (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+      m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+    })(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
+
+    ga('create', 'UA-364526-10', 'auto');
+    ga('send', 'pageview');
+    </script>
+
+    
 
 
 </body>

assets/docs/edge/awscloud.html

@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Amazon Cloud &mdash; Nextflow 20.08.0-SNAPSHOT documentation</title>
+  <title>Amazon Cloud &mdash; Nextflow 20.08.0-edge documentation</title>
 
 
 
@@ -491,7 +491,7 @@ <h2>Advanced configuration<a class="headerlink" href="#advanced-configuration" t
   <div role="contentinfo">
     <p>
 
-        &copy; Copyright 2013-2019, Centre for Genomic Regulation (CRG). 2020, Seqera Labs.
+        &copy; Copyright 2020, Seqera Labs. 2013-2019, Centre for Genomic Regulation (CRG).
 
     </p>
   </div>
@@ -523,6 +523,18 @@ <h2>Advanced configuration<a class="headerlink" href="#advanced-configuration" t
 
 
 
+    <!-- Theme Analytics -->
+    <script>
+    (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+      (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+      m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+    })(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
+
+    ga('create', 'UA-364526-10', 'auto');
+    ga('send', 'pageview');
+    </script>
+
+    
 
 
 </body>

assets/docs/edge/basic.html

@@ -7,7 +7,7 @@
 
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
 
-  <title>Basic concepts &mdash; Nextflow 20.08.0-SNAPSHOT documentation</title>
+  <title>Basic concepts &mdash; Nextflow 20.08.0-edge documentation</title>
 
 
 
@@ -310,7 +310,7 @@ <h2>Configuration options<a class="headerlink" href="#configuration-options" tit
   <div role="contentinfo">
     <p>
 
-        &copy; Copyright 2013-2019, Centre for Genomic Regulation (CRG). 2020, Seqera Labs.
+        &copy; Copyright 2020, Seqera Labs. 2013-2019, Centre for Genomic Regulation (CRG).
 
     </p>
   </div>
@@ -342,6 +342,18 @@ <h2>Configuration options<a class="headerlink" href="#configuration-options" tit
 
 
 
+    <!-- Theme Analytics -->
+    <script>
+    (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
+      (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
+      m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
+    })(window,document,'script','https://www.google-analytics.com/analytics.js','ga');
+
+    ga('create', 'UA-364526-10', 'auto');
+    ga('send', 'pageview');
+    </script>
+
+    
 
 
 </body>