Skip to content

Commit ed0772a

Browse files
Merge pull request #121 from nextstrain/fix/nextclade-remove-invalid-scoreweight
fix(nextclade): remove invalid qc scoreWeight fields
2 parents 8d90a18 + 78cb3a6 commit ed0772a

File tree

2 files changed

+4
-8
lines changed

2 files changed

+4
-8
lines changed

nextclade/dataset/pathogen.json

Lines changed: 2 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -19,8 +19,7 @@
1919
"missingData": {
2020
"enabled": true,
2121
"missingDataThreshold": 2000,
22-
"scoreBias": 500,
23-
"scoreWeight": 50
22+
"scoreBias": 500
2423
},
2524
"snpClusters": {
2625
"enabled": true,
@@ -30,8 +29,7 @@
3029
},
3130
"mixedSites": {
3231
"enabled": true,
33-
"mixedSitesThreshold": 15,
34-
"scoreWeight": 50
32+
"mixedSitesThreshold": 15
3533
},
3634
"frameShifts": {
3735
"enabled": true,

nextclade/defaults/pathogen.json

Lines changed: 2 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -19,8 +19,7 @@
1919
"missingData": {
2020
"enabled": true,
2121
"missingDataThreshold": 2000,
22-
"scoreBias": 500,
23-
"scoreWeight": 50
22+
"scoreBias": 500
2423
},
2524
"snpClusters": {
2625
"enabled": true,
@@ -30,8 +29,7 @@
3029
},
3130
"mixedSites": {
3231
"enabled": true,
33-
"mixedSitesThreshold": 15,
34-
"scoreWeight": 50
32+
"mixedSitesThreshold": 15
3533
},
3634
"frameShifts": {
3735
"enabled": true,

0 commit comments

Comments
 (0)