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1 parent 33314a1 commit 0706ae0Copy full SHA for 0706ae0
phylogenetic/rules/prepare_sequences.smk
@@ -20,8 +20,8 @@ rule download:
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sequences = "data/sequences_{serotype}.fasta.zst",
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metadata = "data/metadata_{serotype}.tsv.zst"
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params:
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- sequences_url = "https://data.nextstrain.org/files/dengue/sequences_{serotype}.fasta.zst",
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- metadata_url = "https://data.nextstrain.org/files/dengue/metadata_{serotype}.tsv.zst"
+ sequences_url = "https://data.nextstrain.org/files/workflows/dengue/sequences_{serotype}.fasta.zst",
+ metadata_url = "https://data.nextstrain.org/files/workflows/dengue/metadata_{serotype}.tsv.zst"
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shell:
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"""
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curl -fsSL --compressed {params.sequences_url:q} --output {output.sequences}
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