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phylogenetic/rules/prepare_sequences.smk

Lines changed: 2 additions & 2 deletions
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@@ -20,8 +20,8 @@ rule download:
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sequences = "data/sequences_{serotype}.fasta.zst",
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metadata = "data/metadata_{serotype}.tsv.zst"
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params:
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sequences_url = "https://data.nextstrain.org/files/dengue/sequences_{serotype}.fasta.zst",
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metadata_url = "https://data.nextstrain.org/files/dengue/metadata_{serotype}.tsv.zst"
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sequences_url = "https://data.nextstrain.org/files/workflows/dengue/sequences_{serotype}.fasta.zst",
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metadata_url = "https://data.nextstrain.org/files/workflows/dengue/metadata_{serotype}.tsv.zst"
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shell:
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"""
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curl -fsSL --compressed {params.sequences_url:q} --output {output.sequences}

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