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SC2 update with new clades (#400)
1 parent d883fe3 commit 2919c0b

34 files changed

+178985
-1950
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data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md

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data/nextstrain/sars-cov-2/BA.2.86/pathogen.json

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data/nextstrain/sars-cov-2/BA.2.86/tree.json

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data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md

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data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/pathogen.json

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data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/tree.json

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data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md

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data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/pathogen.json

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data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/tree.json

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data_output/index.json

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@@ -74,13 +74,13 @@
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"treeJson": "tree.json"
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},
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"capabilities": {
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"clades": 53,
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"clades": 59,
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"customClades": {
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"Nextclade_pango": 4654,
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"partiallyAliased": 4654,
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"clade_nextstrain": 53,
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"Nextclade_pango": 4731,
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"partiallyAliased": 4731,
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"clade_nextstrain": 59,
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"clade_who": 13,
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"clade_display": 53
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"clade_display": 59
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},
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"qc": [
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"frameShifts",
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]
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},
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"versions": [
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{
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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}
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},
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{
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"updatedAt": "2025-12-05T10:40:14Z",
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"tag": "2025-12-05--10-40-14Z",
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}
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],
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"version": {
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"updatedAt": "2025-12-05T10:40:14Z",
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"tag": "2025-12-05--10-40-14Z",
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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"treeJson": "tree.json"
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},
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"capabilities": {
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"clades": 53,
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"clades": 59,
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"customClades": {
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"Nextclade_pango": 4654,
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"partiallyAliased": 4654,
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"clade_nextstrain": 53,
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"Nextclade_pango": 4731,
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"partiallyAliased": 4731,
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"clade_nextstrain": 59,
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"clade_who": 13,
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"clade_display": 53
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"clade_display": 59
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},
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"qc": [
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"frameShifts",
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]
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},
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"versions": [
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{
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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}
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},
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{
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"updatedAt": "2025-12-05T10:40:14Z",
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"tag": "2025-12-05--10-40-14Z",
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}
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],
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"version": {
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"updatedAt": "2025-12-05T10:40:14Z",
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"tag": "2025-12-05--10-40-14Z",
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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"treeJson": "tree.json"
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},
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"capabilities": {
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"clades": 30,
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"clades": 36,
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"customClades": {
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"Nextclade_pango": 3918,
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"partiallyAliased": 3918,
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"clade_nextstrain": 30,
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"Nextclade_pango": 3995,
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"partiallyAliased": 3995,
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"clade_nextstrain": 36,
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"clade_who": 3,
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"clade_display": 30
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"clade_display": 36
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},
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"qc": [
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"frameShifts",
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]
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},
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"versions": [
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{
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"
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}
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},
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{
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"updatedAt": "2025-12-05T10:40:14Z",
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"tag": "2025-12-05--10-40-14Z",
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}
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],
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"version": {
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"updatedAt": "2025-12-05T10:40:14Z",
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"tag": "2025-12-05--10-40-14Z",
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"tag": "unreleased",
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"compatibility": {
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"cli": "3.0.0-alpha.0",
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"web": "3.0.0-alpha.0"

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