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Remove wide-bandwidth parameter
Remove wide-bandwidth parameter based on prior discussion: nextstrain/WNV#89
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ingest/Snakefile

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@@ -558,7 +558,6 @@ rule tip_frequencies:
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min_date = config["tip_frequencies"]["min_date"],
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max_date = config["tip_frequencies"]["max_date"],
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narrow_bandwidth = config["tip_frequencies"]["narrow_bandwidth"],
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wide_bandwidth = config["tip_frequencies"]["wide_bandwidth"],
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output:
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tip_freq = "auspice/tb_tip-frequencies.json"
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shell:
@@ -571,6 +570,5 @@ rule tip_frequencies:
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--min-date {params.min_date} \
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--max-date {params.max_date} \
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--narrow-bandwidth {params.narrow_bandwidth} \
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--wide-bandwidth {params.wide_bandwidth} \
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--output {output.tip_freq} 2> {log}
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"""

ingest/defaults/config.yaml

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@@ -62,4 +62,3 @@ tip_frequencies:
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min_date: "2000-01-01"
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max_date: "10M"
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narrow_bandwidth: 0.2
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wide_bandwidth: 0.6

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