Bump pipeline version to 2.0.0

Author: JoseEspinosa

CHANGELOG.md

@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [1.2.2] - 2022-08-22
+## [2.0.0] - 2022-08-11
 
 ### Enhancements & fixes
 
@@ -25,7 +25,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [[280](https://github.com/nf-core/chipseq/issues/280)] - Update `macs_gsize` in `igenomes.config`, create a new `--read_length` parameter and implement the logic to calculate `--macs_gsize` when the parameter is missing
 - Eliminate `if`s conditions from `deseq2_qc` and `macs2_consensus` (local module and use `ext.when` instead)
 - Remove `deseq2` differential binding analysis of consensus peaks.
-- Filter paired-end files produced by `chromap` due to [this](https://github.com/nf-core/chipseq/issues/291) issue
+- [[280](https://github.com/nf-core/chipseq/issues/291) - Filter paired-end files produced by `chromap` since the resulting `BAM` files can not be processed downstream.
 - Remove <ANTIBODY> from the macs2 consensus publish directory since it can not be referred as input from the IGV process (meta.id not resolved at execution time)
 - Add bytesize link to readme.
 

nextflow.config

@@ -218,7 +218,7 @@ manifest {
     description     = 'ChIP-seq peak-calling and differential analysis pipeline.'
     mainScript      = 'main.nf'
     nextflowVersion = '!>=21.10.3'
-    version         = '1.3.0dev'
+    version = '2.0.0'
 }
 
 // Load modules.config for DSL2 module specific options