Move ANNOTATE_BOOLEAN_PEAKS under skip_peak_annotation

Author: JoseEspinosa

conf/modules.config

@@ -581,20 +581,6 @@ if (!params.skip_peak_annotation) {
                 saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
             ]
         }
-
-        withName: 'ANNOTATE_BOOLEAN_PEAKS' {
-            ext.prefix = { "${meta.id}_peaks" }
-            publishDir = [
-                path: { [
-                    "${params.outdir}/${params.aligner}/mergedLibrary/macs2",
-                    params.narrow_peak? '/narrowPeak' : '/broadPeak',
-                    '/consensus'
-                ].join('') },
-                mode: params.publish_dir_mode,
-                saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
-            ]
-
-        }
     }
 
     if (!params.skip_peak_qc) {
@@ -673,6 +659,18 @@ if (!params.skip_consensus_peaks) {
                     saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
                 ]
             }
+            withName: 'ANNOTATE_BOOLEAN_PEAKS' {
+                ext.prefix = { "${meta.id}_peaks" }
+                publishDir = [
+                    path: { [
+                        "${params.outdir}/${params.aligner}/mergedLibrary/macs2",
+                        params.narrow_peak? '/narrowPeak' : '/broadPeak',
+                        '/consensus'
+                    ].join('') },
+                    mode: params.publish_dir_mode,
+                    saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
+                ]
+            }
         }
     }