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lines changed Original file line number Diff line number Diff line change 1+ reports :
2+ multiqc_report.html :
3+ display : " MultiQC HTML report"
4+ macs2_peak.plots.pdf :
5+ display : " All samples MACS2 peak QC PDF plots"
6+ macs2_annotatePeaks.plots.pdf :
7+ display : " All samples HOMER annotatePeaks.pl QC PDF plots"
8+ " *.consensus_peaks.plots.pdf " :
9+ display : " Consensus peaks DESeq2 QC PDF plots"
10+ " *.consensus_peaks.boolean.intersect.plot.pdf " :
11+ display : " Consensus peaks UpSetR intersection PDF plots"
12+ " *.consensus_peaks.boolean.annotatePeaks.txt " :
13+ display : " Consensus peaks annotated by HOMER"
14+ " *.plotHeatmap.pdf " :
15+ display : " Per-sample deepTools plotHeatmap PDF plots"
16+ " *_peaks.broadPeak " :
17+ display : " Per-sample MACS2 broadPeak file"
18+ " *_peaks.narrowPeak " :
19+ display : " Per-sample MACS2 narrowPeak file"
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