Remove pinning for R packages used in DESeq2 script

Author: drpatelh

modules/local/deseq2_qc.nf

@@ -2,7 +2,9 @@ process DESEQ2_QC {
     tag "$meta.id"
     label 'process_medium'
 
-    conda (params.enable_conda ? "conda-forge::r-base=4.0 bioconda::bioconductor-deseq2=1.28.0 bioconda::bioconductor-biocparallel bioconda::bioconductor-tximport bioconda::bioconductor-complexheatmap conda-forge::r-optparse conda-forge::r-ggplot2 conda-forge::r-rcolorbrewer conda-forge::r-pheatmap" : null)
+    // (Bio)conda packages have intentionally not been pinned to a specific version
+    // This was to avoid the pipeline failing due to package conflicts whilst creating the environment when using -profile conda
+    conda (params.enable_conda ? "conda-forge::r-base bioconda::bioconductor-deseq2 bioconda::bioconductor-biocparallel bioconda::bioconductor-tximport bioconda::bioconductor-complexheatmap conda-forge::r-optparse conda-forge::r-ggplot2 conda-forge::r-rcolorbrewer conda-forge::r-pheatmap" : null)
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
         'https://depot.galaxyproject.org/singularity/mulled-v2-8849acf39a43cdd6c839a369a74c0adc823e2f91:ab110436faf952a33575c64dd74615a84011450b-0' :
         'quay.io/biocontainers/mulled-v2-8849acf39a43cdd6c839a369a74c0adc823e2f91:ab110436faf952a33575c64dd74615a84011450b-0' }"