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lines changed Original file line number Diff line number Diff line change @@ -149,18 +149,6 @@ def validateInputParameters() {
149149 }
150150}
151151
152- //
153- // Get attribute from genome config file e.g. fasta
154- //
155- // def getGenomeAttribute(attribute) {
156- // if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
157- // if (params.genomes[ params.genome ].containsKey(attribute)) {
158- // return params.genomes[ params.genome ][ attribute ]
159- // }
160- // }
161- // return null
162- // }
163-
164152//
165153// Exit pipeline if incorrect --genome key provided
166154//
@@ -175,21 +163,6 @@ def genomeExistsError() {
175163 }
176164}
177165
178- //
179- // Get macs genome size (macs_gsize)
180- //
181- // def getMacsGsize(params) {
182- // def val = null
183- // if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
184- // if (params.genomes[ params.genome ].containsKey('macs_gsize')) {
185- // if (params.genomes[ params.genome ][ 'macs_gsize' ].containsKey(params.read_length.toString())) {
186- // val = params.genomes[ params.genome ][ 'macs_gsize' ][ params.read_length.toString() ]
187- // }
188- // }
189- // }
190- // return val
191- // }
192-
193166//
194167// Generate methods description for MultiQC
195168//
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