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Get rid of the functions in pipeline utils
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  • subworkflows/local/utils_nfcore_chipseq_pipeline

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subworkflows/local/utils_nfcore_chipseq_pipeline/main.nf

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Original file line numberDiff line numberDiff line change
@@ -149,18 +149,6 @@ def validateInputParameters() {
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}
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}
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//
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// Get attribute from genome config file e.g. fasta
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//
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// def getGenomeAttribute(attribute) {
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// if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
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// if (params.genomes[ params.genome ].containsKey(attribute)) {
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// return params.genomes[ params.genome ][ attribute ]
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// }
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// }
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// return null
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// }
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//
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// Exit pipeline if incorrect --genome key provided
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//
@@ -175,21 +163,6 @@ def genomeExistsError() {
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}
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}
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//
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// Get macs genome size (macs_gsize)
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//
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// def getMacsGsize(params) {
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// def val = null
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// if (params.genomes && params.genome && params.genomes.containsKey(params.genome)) {
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// if (params.genomes[ params.genome ].containsKey('macs_gsize')) {
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// if (params.genomes[ params.genome ][ 'macs_gsize' ].containsKey(params.read_length.toString())) {
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// val = params.genomes[ params.genome ][ 'macs_gsize' ][ params.read_length.toString() ]
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// }
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// }
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// }
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// return val
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// }
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//
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// Generate methods description for MultiQC
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//

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