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docs/output.md
@@ -97,6 +97,8 @@ The `--save_unaligned` parameter enables to obtain FastQ files containing unmapp
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- `*.Log.final.out`: STAR alignment report containing the mapping results summary.
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- `*.Log.out` and `*.Log.progress.out`: STAR log files containing detailed information about the run. Typically only useful for debugging purposes.
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## Merged library-level analysis
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The library-level alignments associated with the same sample are merged and subsequently used for the downstream analyses.
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