Update multiqc version

Author: JoseEspinosa

assets/multiqc_config.yml

@@ -7,17 +7,6 @@ data_format: "yaml"
 
 export_plots: true
 
-run_modules:
-  - custom_content
-  - fastqc
-  - cutadapt
-  - samtools
-  - picard
-  - preseq
-  - featureCounts
-  - deeptools
-  - phantompeakqualtools
-
 exclude_modules:
   - "general_stats"
 

modules/local/multiqc.nf

@@ -1,10 +1,10 @@
 process MULTIQC {
     label 'process_medium'
 
-    conda "bioconda::multiqc=1.13a"
+    conda "bioconda::multiqc=1.23"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/multiqc:1.13a--pyhdfd78af_1':
-        'biocontainers/multiqc:1.13a--pyhdfd78af_1' }"
+        'https://depot.galaxyproject.org/singularity/multiqc:1.23--pyhdfd78af_0' :
+        'biocontainers/multiqc:1.23--pyhdfd78af_0' }"
 
     input:
     path workflow_summary

workflows/chipseq.nf

@@ -519,7 +519,7 @@ workflow CHIPSEQ {
     // Collate and save software versions
     //
     softwareVersionsToYAML(ch_versions)
-        .collectFile(storeDir: "${params.outdir}/pipeline_info", name: 'nf_core_atacseq_software_mqc_versions.yml', sort: true, newLine: true)
+        .collectFile(storeDir: "${params.outdir}/pipeline_info", name: 'nf_core_chipseq_software_mqc_versions.yml', sort: true, newLine: true)
         .set { ch_collated_versions }
 
     //