Revert xfun

Author: drpatelh

CHANGELOG.md

@@ -57,7 +57,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
 * Update r-lattice `0.20_35` -> `0.20_41`
 * Update r-upsetr `1.3.3` -> `1.4.0`
 * Update r-scales `1.0.0` -> `1.1.1`
-* Update r-xfun `0.3` -> `0.15`
+* Update r-xfun `0.3` -> `0.14`
 * Update fastqc `0.11.8` -> `0.11.9`
 * Update trim-galore `0.5.0` -> `0.6.5`
 * Update samtools `1.9` -> `1.10`

bin/scrape_software_versions.py

@@ -13,7 +13,7 @@
     'BEDTools': ['v_bedtools.txt', r"bedtools v(\S+)"],
     'BamTools': ['v_bamtools.txt', r"bamtools (\S+)"],
     'deepTools': ['v_deeptools.txt', r"plotFingerprint (\S+)"],
-    'Picard': ['v_picard.txt', r"([\d\.]+)-SNAPSHOT"],
+    'Picard': ['v_picard.txt', r"\n(\S+)"],
     'R': ['v_R.txt', r"R version (\S+)"],
     'Pysam': ['v_pysam.txt', r"(\S+)"],
     'MACS2': ['v_macs2.txt', r"macs2 (\S+)"],

environment.yml

@@ -21,7 +21,7 @@ dependencies:
   - conda-forge::r-pheatmap=1.0.12
   - conda-forge::r-lattice=0.20_41
   - conda-forge::r-upsetr=1.4.0
-  - conda-forge::r-xfun=0.15
+  - conda-forge::r-xfun=0.14
   - conda-forge::gawk=5.1.0
   - conda-forge::pigz=2.3.4               ## Required for TrimGalore multi-threading