Fix output of bwa index when provided as not compressed input

JoseEspinosa · JoseEspinosa · commit cd28cd0c92c3 · 2024-07-25T10:10:54.000+02:00
diff --git a/subworkflows/local/prepare_genome.nf b/subworkflows/local/prepare_genome.nf
@@ -146,7 +146,7 @@ workflow PREPARE_GENOME {
                 ch_bwa_index = UNTAR_BWA_INDEX ( [ [:], bwa_index ] ).untar
                 ch_versions  = ch_versions.mix(UNTAR_BWA_INDEX.out.versions)
             } else {
-                ch_bwa_index = file(bwa_index)
+                ch_bwa_index = [ [:], file(bwa_index) ] 
             }
         } else {
             ch_bwa_index = BWA_INDEX ( ch_fasta.map { [ [:], it ] } ).index

Original file line number	Diff line number	Diff line change
`@@ -146,7 +146,7 @@ workflow PREPARE_GENOME {`
`146`	`146`	`ch_bwa_index = UNTAR_BWA_INDEX ( [ [:], bwa_index ] ).untar`
`147`	`147`	`ch_versions = ch_versions.mix(UNTAR_BWA_INDEX.out.versions)`
`148`	`148`	`} else {`
`149`		`- ch_bwa_index = file(bwa_index)`
	`149`	`+ ch_bwa_index = [ [:], file(bwa_index) ]`
`150`	`150`	`}`
`151`	`151`	`} else {`
`152`	`152`	`ch_bwa_index = BWA_INDEX ( ch_fasta.map { [ [:], it ] } ).index`