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matthiasho
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switch "skip" icon to ⏭️
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nextflow_schema.json

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@@ -168,7 +168,7 @@
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"default": false,
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"description": "Skip the adapter trimming step.",
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"help_text": "Use this if your input FastQ files have already been trimmed outside of the workflow or if you're very confident that there is no adapter contamination in your data.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"save_trimmed": {
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"type": "boolean",
@@ -270,21 +270,21 @@
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},
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"skip_peak_qc": {
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"type": "boolean",
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"fa_icon": "fas fa-forward",
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"fa_icon": "fas fa-fast-forward",
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"description": "Skip MACS2 peak QC plot generation.",
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"default": false
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},
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"skip_peak_annotation": {
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"type": "boolean",
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"fa_icon": "fas fa-forward",
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"fa_icon": "fas fa-fast-forward",
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"description": "Skip annotation of MACS2 and consensus peaks with HOMER.",
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"default": false
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},
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"skip_consensus_peaks": {
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"type": "boolean",
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"default": false,
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"description": "Skip consensus peak generation, annotation and counting.",
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"fa_icon": "fas fa-forward",
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"fa_icon": "fas fa-fast-forward",
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"help_text": ""
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}
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},
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"type": "boolean",
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"default": false,
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"description": "Skip differential accessibility analysis.",
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"fa_icon": "fas fa-forward",
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"fa_icon": "fas fa-fast-forward",
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"help_text": ""
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}
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},
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"type": "boolean",
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"default": false,
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"description": "Skip FastQC.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"skip_picard_metrics": {
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"type": "boolean",
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"default": false,
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"description": "Skip Picard CollectMultipleMetrics.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"skip_preseq": {
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"type": "boolean",
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"default": false,
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"description": "Skip Preseq.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"skip_plot_profile": {
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"type": "boolean",
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"default": false,
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"description": "Skip deepTools plotProfile.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"skip_plot_fingerprint": {
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"type": "boolean",
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"default": false,
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"description": "Skip deepTools plotFingerprint.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"skip_spp": {
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"type": "boolean",
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"default": false,
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"description": "Skip Phantompeakqualtools.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"skip_igv": {
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"type": "boolean",
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"default": false,
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"description": "Skip IGV.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"skip_multiqc": {
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"type": "boolean",
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"default": false,
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"description": "Skip MultiQC.",
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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}
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},
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"fa_icon": "fas fa-forward"
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"fa_icon": "fas fa-fast-forward"
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},
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"institutional_config_options": {
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"title": "Institutional config options",
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"$ref": "#/definitions/generic_options"
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}
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]
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}
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}

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