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JoseEspinosaJoseEspinosa
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Make lint happy
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‎modules.json‎

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"bowtie2/align": {
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"branch": "master",
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"git_sha": "9bfc81874554e87740bcb3e5e07acf0a153c9ecb",
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"installed_by": [
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"fastq_align_bowtie2",
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"modules"
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]
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"installed_by": ["fastq_align_bowtie2", "modules"]
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},
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"bowtie2/build": {
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"branch": "master",
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"git_sha": "1fea64f5132a813ec97c1c6d3a74e0aee7142b6d",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"bwa/index": {
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"branch": "master",
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"git_sha": "e0ff65e1fb313677de09f5f477ae3da30ce19b7b",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"bwa/mem": {
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"branch": "master",
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"git_sha": "2201e21b09213f083832ac58e33353d410a6fde7",
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"installed_by": [
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"fastq_align_bwa",
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"modules"
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]
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"installed_by": ["fastq_align_bwa", "modules"]
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},
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"chromap/chromap": {
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"branch": "master",
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"git_sha": "8438ab16df8334b8e15526cef7e8eda7f218ea20",
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"installed_by": [
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"fastq_align_chromap",
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"modules"
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],
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"installed_by": ["fastq_align_chromap", "modules"],
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"patch": "modules/nf-core/chromap/chromap/chromap-chromap.diff"
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},
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"chromap/index": {
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"branch": "master",
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"git_sha": "8438ab16df8334b8e15526cef7e8eda7f218ea20",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"custom/getchromsizes": {
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"branch": "master",
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"git_sha": "1ceaa8ba4d0fd886dbca0e545815d905b7407de7",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"deeptools/computematrix": {
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"branch": "master",
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"git_sha": "dd51244ab3b1e4a30ddeb93ba3c6ef3ce1f02ef8",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"deeptools/plotfingerprint": {
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"branch": "master",
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"git_sha": "dd51244ab3b1e4a30ddeb93ba3c6ef3ce1f02ef8",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"deeptools/plotheatmap": {
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"branch": "master",
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"git_sha": "dd51244ab3b1e4a30ddeb93ba3c6ef3ce1f02ef8",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"deeptools/plotprofile": {
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"branch": "master",
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"git_sha": "dd51244ab3b1e4a30ddeb93ba3c6ef3ce1f02ef8",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"fastqc": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"fastq_fastqc_umitools_trimgalore",
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"modules"
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]
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"installed_by": ["fastq_fastqc_umitools_trimgalore", "modules"]
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},
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"gffread": {
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"branch": "master",
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"git_sha": "6c996d7fbe0816dcbb68ce587ad5f873313682a1",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"gunzip": {
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"branch": "master",
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"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"homer/annotatepeaks": {
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"branch": "master",
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"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"khmer/uniquekmers": {
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"branch": "master",
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"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"macs3/callpeak": {
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"branch": "master",
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"git_sha": "3a3f471ed42f640115b2661edee5b258e6a254c1",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"multiqc": {
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"branch": "master",
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"git_sha": "b80f5fd12ff7c43938f424dd76392a2704fa2396",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"phantompeakqualtools": {
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"branch": "master",
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"git_sha": "2dfe9afa90fefc70e320140e5f41287f01f324b0",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"picard/collectmultiplemetrics": {
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"branch": "master",
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"git_sha": "0dee12b56ccecc416d6f7a1ccd85fd571eab3307",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"picard/markduplicates": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"bam_markduplicates_picard",
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"modules"
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]
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"installed_by": ["bam_markduplicates_picard", "modules"]
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},
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"picard/mergesamfiles": {
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"branch": "master",
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"git_sha": "0dee12b56ccecc416d6f7a1ccd85fd571eab3307",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"preseq/lcextrap": {
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"branch": "master",
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"git_sha": "2c6b1144ed58b6184ad58fc4e6b6a90219b4bf4f",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"samtools/flagstat": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"bam_stats_samtools",
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"modules"
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]
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"installed_by": ["bam_stats_samtools", "modules"]
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},
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"samtools/idxstats": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"bam_stats_samtools",
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"modules"
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]
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"installed_by": ["bam_stats_samtools", "modules"]
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},
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"samtools/index": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"bam_markduplicates_picard",
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"bam_sort_stats_samtools",
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"modules"
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]
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"installed_by": ["bam_markduplicates_picard", "bam_sort_stats_samtools", "modules"]
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},
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"samtools/sort": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"bam_sort_stats_samtools",
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"modules"
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]
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"installed_by": ["bam_sort_stats_samtools", "modules"]
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},
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"samtools/stats": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"bam_stats_samtools",
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"modules"
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]
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"installed_by": ["bam_stats_samtools", "modules"]
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},
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"subread/featurecounts": {
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"branch": "master",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"trimgalore": {
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"branch": "master",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": [
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"fastq_fastqc_umitools_trimgalore",
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"modules"
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]
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"installed_by": ["fastq_fastqc_umitools_trimgalore", "modules"]
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},
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"ucsc/bedgraphtobigwig": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"umitools/extract": {
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"branch": "master",
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"git_sha": "b4919e9a2b4d8b71061e601633db4600a3858fa1",
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"installed_by": [
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"fastq_fastqc_umitools_trimgalore"
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]
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"installed_by": ["fastq_fastqc_umitools_trimgalore"]
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},
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"untar": {
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"branch": "master",
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"git_sha": "4e5f4687318f24ba944a13609d3ea6ebd890737d",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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},
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"untarfiles": {
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"branch": "master",
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"git_sha": "3f5420aa22e00bd030a2556dfdffc9e164ec0ec5",
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"installed_by": [
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"modules"
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]
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"installed_by": ["modules"]
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}
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}
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},
@@ -263,78 +183,55 @@
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"bam_markduplicates_picard": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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},
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"bam_sort_stats_samtools": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"fastq_align_bowtie2",
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"fastq_align_bwa",
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"fastq_align_chromap"
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]
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"installed_by": ["fastq_align_bowtie2", "fastq_align_bwa", "fastq_align_chromap"]
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},
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"bam_stats_samtools": {
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"branch": "master",
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"git_sha": "0eacd714effe5aac1c1de26593873960b3346cab",
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"installed_by": [
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"bam_markduplicates_picard",
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"bam_sort_stats_samtools"
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]
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"installed_by": ["bam_markduplicates_picard", "bam_sort_stats_samtools"]
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},
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"fastq_align_bowtie2": {
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"branch": "master",
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"git_sha": "0eacd714effe5aac1c1de26593873960b3346cab",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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},
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"fastq_align_bwa": {
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"branch": "master",
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"git_sha": "e0ff65e1fb313677de09f5f477ae3da30ce19b7b",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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},
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"fastq_align_chromap": {
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"branch": "master",
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"git_sha": "cfd937a668919d948f6fcbf4218e79de50c2f36f",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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},
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"fastq_fastqc_umitools_trimgalore": {
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"branch": "master",
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"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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},
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"utils_nextflow_pipeline": {
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"branch": "master",
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"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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},
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"utils_nfcore_pipeline": {
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"branch": "master",
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"git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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},
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"utils_nfvalidation_plugin": {
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"branch": "master",
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"git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
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"installed_by": [
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"subworkflows"
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]
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"installed_by": ["subworkflows"]
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}
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}
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}
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}
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}
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}
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}

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