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fix linting
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subworkflows/local/utils_nfcore_deepmodeloptim_pipeline/main.nf

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@@ -98,7 +98,7 @@ workflow PIPELINE_INITIALISATION {
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ch_genome = params.genome == null ?
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Channel.of([[],[]]) :
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(
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params.genome in params.genomes ?
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params.genome in params.genomes ?
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Channel.fromPath(params.genomes[params.genome]['fasta'], checkIfExists: true) :
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Channel.fromPath(params.genome, checkIfExists: true)
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)

workflows/deepmodeloptim.nf

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -111,7 +111,7 @@ workflow DEEPMODELOPTIM {
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// of the channel depends on which process finishes first (run in parallel)
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ch_check_input_data = ch_transformed_data.toSortedList().flatten().buffer(size:2).first()
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ch_check_input_config = ch_yaml_sub_config.toSortedList().flatten().buffer(size:2).first()
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CHECK_MODEL_WF (
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ch_check_input_data,
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ch_check_input_config,

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