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fix pre-commit linting
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3 files changed

+6
-6
lines changed
  • modules/local/stimulus/split_yaml
  • subworkflows/local

3 files changed

+6
-6
lines changed

modules/local/stimulus/split_yaml/main.nf

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -38,4 +38,4 @@ process STIMULUS_SPLIT_YAML {
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stimulus: \$(stimulus -v | cut -d ' ' -f 3)
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END_VERSIONS
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"""
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}
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}

subworkflows/local/split_data_config_unified/main.nf

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -26,13 +26,13 @@ workflow SPLIT_DATA_CONFIG_UNIFIED_WF {
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// Process split configs - transpose and add split_id to meta
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ch_split_configs = STIMULUS_SPLIT_YAML.out.split_config
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.transpose()
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.map { meta, yaml ->
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.map { meta, yaml ->
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// Extract split info from descriptive filename
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def split_id = yaml.baseName.replaceAll(/.*_([^_]+_[^_]+)_split$/, '$1')
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[ meta + [split_id: split_id], yaml]
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[ meta + [split_id: split_id], yaml]
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}
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// Process transform configs - transpose and add transform_id to meta
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// Process transform configs - transpose and add transform_id to meta
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ch_transform_configs = STIMULUS_SPLIT_YAML.out.transform_config
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.transpose()
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.map { meta, yaml ->
@@ -55,4 +55,4 @@ workflow SPLIT_DATA_CONFIG_UNIFIED_WF {
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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THE END
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~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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*/
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*/

subworkflows/local/transform_csv/main.nf

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Original file line numberDiff line numberDiff line change
@@ -46,7 +46,7 @@ workflow TRANSFORM_CSV_WF {
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data: item.data
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config: item.config
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}
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// run stimulus transform
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STIMULUS_TRANSFORM_CSV(
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ch_input.data,

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