Skip to content

Commit a3887fe

Browse files
committed
Update CHANGELOG and nf-test snapshots.
1 parent a423ed3 commit a3887fe

File tree

2 files changed

+138
-6
lines changed

2 files changed

+138
-6
lines changed

CHANGELOG.md

Lines changed: 8 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -3,12 +3,6 @@
33
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
44
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
55

6-
## dev
7-
8-
### `Changed`
9-
10-
[#34](https://github.com/nf-core/demo/pull/34) Updated the JSON schema to make input validation stricter, thus preventing more errors during the pipeline run.
11-
126
## 1.0.2
137

148
### Credits
@@ -17,9 +11,17 @@ Special thanks to the following for their reviews and assistance:
1711

1812
- [Chris Hakkaart](https://github.com/christopher-hakkaart)
1913
- [Marcel Ribeiro-Dantas](https://github.com/mribeirodantas)
14+
- [Maxime Garcia](https://github.com/maxulysse)
15+
- [Geraldine Van der Auwera](https://github.com/vdauwera)
16+
- [Florian Wuennemann](https://github.com/FloWuenne)
2017

2118
### Changed
2219

20+
[#39][https://github.com/nf-core/demo/pull/39] - Remove -C from bach in nextflow.config
21+
[#38][https://github.com/nf-core/demo/pull/38] - Template update for nf-core/tools v3.3.1
22+
[#36][https://github.com/nf-core/demo/pull/36] - Template update for nf-core/tools v3.2.1
23+
[#34][https://github.com/nf-core/demo/pull/34] - updated nextflow_schema.json
24+
[#32][https://github.com/nf-core/demo/pull/32] - Minor fixes and template update
2325
[#29](https://github.com/nf-core/demo/pull/29) - Template update for nf-core/tools v3.2.0
2426
[#23](https://github.com/nf-core/demo/pull/23) - Update to latest `seqtk` and `fastqc` modules
2527
[#21](https://github.com/nf-core/demo/pull/21) - Template update for nf-core/tools v3.1.0

tests/default.nf.test.snap

Lines changed: 130 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,130 @@
1+
{
2+
"-profile test": {
3+
"content": [
4+
7,
5+
{
6+
"FASTQC": {
7+
"fastqc": "0.12.1"
8+
},
9+
"SEQTK_TRIM": {
10+
"seqtk": "1.4-r122"
11+
},
12+
"Workflow": {
13+
"nf-core/demo": "v1.0.2"
14+
}
15+
},
16+
[
17+
"fastqc",
18+
"fastqc/SAMPLE1_PE",
19+
"fastqc/SAMPLE1_PE/SAMPLE1_PE_1_fastqc.html",
20+
"fastqc/SAMPLE1_PE/SAMPLE1_PE_2_fastqc.html",
21+
"fastqc/SAMPLE2_PE",
22+
"fastqc/SAMPLE2_PE/SAMPLE2_PE_1_fastqc.html",
23+
"fastqc/SAMPLE2_PE/SAMPLE2_PE_2_fastqc.html",
24+
"fastqc/SAMPLE3_SE",
25+
"fastqc/SAMPLE3_SE/SAMPLE3_SE_1_fastqc.html",
26+
"fastqc/SAMPLE3_SE/SAMPLE3_SE_2_fastqc.html",
27+
"fq",
28+
"fq/SAMPLE1_PE",
29+
"fq/SAMPLE1_PE/SAMPLE1_PE_sample1_R1.fastq.gz",
30+
"fq/SAMPLE1_PE/SAMPLE1_PE_sample1_R2.fastq.gz",
31+
"fq/SAMPLE2_PE",
32+
"fq/SAMPLE2_PE/SAMPLE2_PE_sample2_R1.fastq.gz",
33+
"fq/SAMPLE2_PE/SAMPLE2_PE_sample2_R2.fastq.gz",
34+
"fq/SAMPLE3_SE",
35+
"fq/SAMPLE3_SE/SAMPLE3_SE_sample1_R1.fastq.gz",
36+
"fq/SAMPLE3_SE/SAMPLE3_SE_sample2_R1.fastq.gz",
37+
"multiqc",
38+
"multiqc/multiqc_data",
39+
"multiqc/multiqc_data/BETA-multiqc.parquet",
40+
"multiqc/multiqc_data/fastqc-status-check-heatmap.txt",
41+
"multiqc/multiqc_data/fastqc_overrepresented_sequences_plot.txt",
42+
"multiqc/multiqc_data/fastqc_per_base_n_content_plot.txt",
43+
"multiqc/multiqc_data/fastqc_per_base_sequence_quality_plot.txt",
44+
"multiqc/multiqc_data/fastqc_per_sequence_gc_content_plot_Counts.txt",
45+
"multiqc/multiqc_data/fastqc_per_sequence_gc_content_plot_Percentages.txt",
46+
"multiqc/multiqc_data/fastqc_per_sequence_quality_scores_plot.txt",
47+
"multiqc/multiqc_data/fastqc_sequence_counts_plot.txt",
48+
"multiqc/multiqc_data/fastqc_sequence_duplication_levels_plot.txt",
49+
"multiqc/multiqc_data/fastqc_sequence_length_distribution_plot.txt",
50+
"multiqc/multiqc_data/fastqc_top_overrepresented_sequences_table.txt",
51+
"multiqc/multiqc_data/multiqc.log",
52+
"multiqc/multiqc_data/multiqc_citations.txt",
53+
"multiqc/multiqc_data/multiqc_data.json",
54+
"multiqc/multiqc_data/multiqc_fastqc.txt",
55+
"multiqc/multiqc_data/multiqc_general_stats.txt",
56+
"multiqc/multiqc_data/multiqc_software_versions.txt",
57+
"multiqc/multiqc_data/multiqc_sources.txt",
58+
"multiqc/multiqc_plots",
59+
"multiqc/multiqc_plots/pdf",
60+
"multiqc/multiqc_plots/pdf/fastqc-status-check-heatmap.pdf",
61+
"multiqc/multiqc_plots/pdf/fastqc_overrepresented_sequences_plot.pdf",
62+
"multiqc/multiqc_plots/pdf/fastqc_per_base_n_content_plot.pdf",
63+
"multiqc/multiqc_plots/pdf/fastqc_per_base_sequence_quality_plot.pdf",
64+
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Counts.pdf",
65+
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_gc_content_plot_Percentages.pdf",
66+
"multiqc/multiqc_plots/pdf/fastqc_per_sequence_quality_scores_plot.pdf",
67+
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-cnt.pdf",
68+
"multiqc/multiqc_plots/pdf/fastqc_sequence_counts_plot-pct.pdf",
69+
"multiqc/multiqc_plots/pdf/fastqc_sequence_duplication_levels_plot.pdf",
70+
"multiqc/multiqc_plots/pdf/fastqc_sequence_length_distribution_plot.pdf",
71+
"multiqc/multiqc_plots/pdf/fastqc_top_overrepresented_sequences_table.pdf",
72+
"multiqc/multiqc_plots/png",
73+
"multiqc/multiqc_plots/png/fastqc-status-check-heatmap.png",
74+
"multiqc/multiqc_plots/png/fastqc_overrepresented_sequences_plot.png",
75+
"multiqc/multiqc_plots/png/fastqc_per_base_n_content_plot.png",
76+
"multiqc/multiqc_plots/png/fastqc_per_base_sequence_quality_plot.png",
77+
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Counts.png",
78+
"multiqc/multiqc_plots/png/fastqc_per_sequence_gc_content_plot_Percentages.png",
79+
"multiqc/multiqc_plots/png/fastqc_per_sequence_quality_scores_plot.png",
80+
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-cnt.png",
81+
"multiqc/multiqc_plots/png/fastqc_sequence_counts_plot-pct.png",
82+
"multiqc/multiqc_plots/png/fastqc_sequence_duplication_levels_plot.png",
83+
"multiqc/multiqc_plots/png/fastqc_sequence_length_distribution_plot.png",
84+
"multiqc/multiqc_plots/png/fastqc_top_overrepresented_sequences_table.png",
85+
"multiqc/multiqc_plots/svg",
86+
"multiqc/multiqc_plots/svg/fastqc-status-check-heatmap.svg",
87+
"multiqc/multiqc_plots/svg/fastqc_overrepresented_sequences_plot.svg",
88+
"multiqc/multiqc_plots/svg/fastqc_per_base_n_content_plot.svg",
89+
"multiqc/multiqc_plots/svg/fastqc_per_base_sequence_quality_plot.svg",
90+
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Counts.svg",
91+
"multiqc/multiqc_plots/svg/fastqc_per_sequence_gc_content_plot_Percentages.svg",
92+
"multiqc/multiqc_plots/svg/fastqc_per_sequence_quality_scores_plot.svg",
93+
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-cnt.svg",
94+
"multiqc/multiqc_plots/svg/fastqc_sequence_counts_plot-pct.svg",
95+
"multiqc/multiqc_plots/svg/fastqc_sequence_duplication_levels_plot.svg",
96+
"multiqc/multiqc_plots/svg/fastqc_sequence_length_distribution_plot.svg",
97+
"multiqc/multiqc_plots/svg/fastqc_top_overrepresented_sequences_table.svg",
98+
"multiqc/multiqc_report.html",
99+
"pipeline_info",
100+
"pipeline_info/nf_core_demo_software_mqc_versions.yml"
101+
],
102+
[
103+
"SAMPLE1_PE_sample1_R1.fastq.gz:md5,7dd2fd0d542d9259d9aed53550907fae",
104+
"SAMPLE1_PE_sample1_R2.fastq.gz:md5,1995fe8488384d801807805f26ceca8a",
105+
"SAMPLE2_PE_sample2_R1.fastq.gz:md5,05dba9c26396cbdbe0e6da26f037106e",
106+
"SAMPLE2_PE_sample2_R2.fastq.gz:md5,63d5e4ac37927c2ecec4b74d2ff99a10",
107+
"SAMPLE3_SE_sample1_R1.fastq.gz:md5,7dd2fd0d542d9259d9aed53550907fae",
108+
"SAMPLE3_SE_sample2_R1.fastq.gz:md5,05dba9c26396cbdbe0e6da26f037106e",
109+
"fastqc-status-check-heatmap.txt:md5,0f1975c565a16bf09be08a05c204ded7",
110+
"fastqc_overrepresented_sequences_plot.txt:md5,4b23cea39c4e23deef6b97810bc1ee46",
111+
"fastqc_per_base_n_content_plot.txt:md5,037692101c0130c72493d3bbfa3afac1",
112+
"fastqc_per_base_sequence_quality_plot.txt:md5,bfe735f3e31befe13bdf6761bb297d6e",
113+
"fastqc_per_sequence_gc_content_plot_Counts.txt:md5,7108d19c46ef7883e864ba274c457d2e",
114+
"fastqc_per_sequence_gc_content_plot_Percentages.txt:md5,23f527c80a148e4f34e5a43f6e520a90",
115+
"fastqc_per_sequence_quality_scores_plot.txt:md5,a0cc0e6df7bfb05257da1cfc88b13c50",
116+
"fastqc_sequence_counts_plot.txt:md5,c6e4e1588e6765fe8df27812a1322fbd",
117+
"fastqc_sequence_duplication_levels_plot.txt:md5,3cde2db4033f6c64648976d1174db925",
118+
"fastqc_sequence_length_distribution_plot.txt:md5,e82b9b14a7e24c0c5f27af97cebb6870",
119+
"multiqc_citations.txt:md5,4c806e63a283ec1b7e78cdae3a923d4f",
120+
"multiqc_fastqc.txt:md5,1a41c2158adc9947bff9232962f70110",
121+
"multiqc_general_stats.txt:md5,0b54e4e764665bd57fe0f95216744a78"
122+
]
123+
],
124+
"meta": {
125+
"nf-test": "0.9.2",
126+
"nextflow": "25.04.2"
127+
},
128+
"timestamp": "2025-06-26T20:06:21.191873263"
129+
}
130+
}

0 commit comments

Comments
 (0)