chore: explain contrast keys

atrigila · atrigila · commit 07ae87f8a4c1 · 2025-05-14T16:10:19.000Z
diff --git a/workflows/differentialabundance.nf b/workflows/differentialabundance.nf
@@ -191,7 +191,7 @@ workflow DIFFERENTIALABUNDANCE {
                     if (contrast.containsKey('formula')) {
                         tuple('id': contrast.id)
                     }
-                    else if (contrast.containsKey('comparison')) {
+                    else if (contrast.containsKey('comparison')) { //  Necessary line for Maxquant to work. Check if it can be simplified to use contrast.id
                         tuple('id': contrast.comparison[0])
                     }
                 }

Original file line number	Diff line number	Diff line change
`@@ -191,7 +191,7 @@ workflow DIFFERENTIALABUNDANCE {`
`191`	`191`	`if (contrast.containsKey('formula')) {`
`192`	`192`	`tuple('id': contrast.id)`
`193`	`193`	`}`
`194`		`- else if (contrast.containsKey('comparison')) {`
	`194`	`+ else if (contrast.containsKey('comparison')) { // Necessary line for Maxquant to work. Check if it can be simplified to use contrast.id`
`195`	`195`	`tuple('id': contrast.comparison[0])`
`196`	`196`	`}`
`197`	`197`	`}`