189189 " nextflow" : " 25.04.8"
190190 },
191191 " timestamp" : " 2025-10-07T11:20:29.155475939"
192+ },
193+ " Test rnaseq dream profile - complex contrast - with zero intercept" : {
194+ " content" : [
195+ 19 ,
196+ {
197+ " CSVTK_JOIN" : {
198+ " csvtk" : " 0.31.0"
199+ },
200+ " CUSTOM_FILTERDIFFERENTIALTABLE" : {
201+ " pandas" : " 1.5.2"
202+ },
203+ " GTF_TO_TABLE" : {
204+ " atlas-gene-annotation-manipulation" : " 1.1.1"
205+ },
206+ " GUNZIP_GTF" : {
207+ " gunzip" : 1.1
208+ },
209+ " VALIDATOR" : {
210+ " r-shinyngs" : " 2.2.4"
211+ },
212+ " VARIANCEPARTITION_DREAM" : {
213+ " r-base" : " 4.3.3" ,
214+ " bioconductor-edger" : " 4.0.16" ,
215+ " variancePartition" : " 1.32.2"
216+ },
217+ " Workflow" : {
218+ " nf-core/differentialabundance" : " v1.6.0dev"
219+ }
220+ },
221+ [
222+ " pipeline_info" ,
223+ " pipeline_info/collated_versions.yml" ,
224+ " pipeline_info/nf_core_differentialabundance_software_versions.yml" ,
225+ " tables" ,
226+ " tables/annotation" ,
227+ " tables/annotation/SRP254919.anno.tsv" ,
228+ " tables/differential" ,
229+ " tables/differential/full_model_with_interactions_SRP254919.dream.results.tsv" ,
230+ " tables/differential/full_model_with_interactions_SRP254919.dream.results_filtered.tsv" ,
231+ " tables/differential/full_model_with_interactions_SRP254919_dream.annotated.tsv" ,
232+ " tables/differential/interaction_genotype_treatment_SRP254919.dream.results.tsv" ,
233+ " tables/differential/interaction_genotype_treatment_SRP254919.dream.results_filtered.tsv" ,
234+ " tables/differential/interaction_genotype_treatment_SRP254919_dream.annotated.tsv" ,
235+ " tables/differential/treatment_plus_genotype_SRP254919.dream.results.tsv" ,
236+ " tables/differential/treatment_plus_genotype_SRP254919.dream.results_filtered.tsv" ,
237+ " tables/differential/treatment_plus_genotype_SRP254919_dream.annotated.tsv" ,
238+ " tables/differential/zero_intercept_model_1_SRP254919.dream.results.tsv" ,
239+ " tables/differential/zero_intercept_model_1_SRP254919.dream.results_filtered.tsv" ,
240+ " tables/differential/zero_intercept_model_1_SRP254919_dream.annotated.tsv" ,
241+ " tables/differential/zero_intercept_model_2_SRP254919.dream.results.tsv" ,
242+ " tables/differential/zero_intercept_model_2_SRP254919.dream.results_filtered.tsv" ,
243+ " tables/differential/zero_intercept_model_2_SRP254919_dream.annotated.tsv"
244+ ],
245+ [
246+ " SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb"
247+ ]
248+ ],
249+ " meta" : {
250+ " nf-test" : " 0.9.2" ,
251+ " nextflow" : " 25.04.8"
252+ },
253+ " timestamp" : " 2025-10-14T02:44:11.543670988"
192254 }
193255}
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