modify github ci custom_paramsheet test tag

suzannejin · suzannejin · commit 472262c08ff7 · 2025-05-28T10:43:31.000Z
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -44,7 +44,8 @@ jobs:
           - "maxquant"
           - "soft"
           - "rnaseq_limma"
-          - "paramset"
+          - "rnaseq_dream"
+          - "custom_paramsheet"
         compute_profile:
           - "docker"
           - "singularity"
diff --git a/tests/test_custom_paramsheet.nf.test b/tests/test_custom_paramsheet.nf.test
@@ -2,7 +2,7 @@ nextflow_pipeline {
 
     name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"
     script "../main.nf"
-    tag "paramset"
+    tag "custom_paramsheet"
     tag "pipeline"
 
     test("Test profile - deseq2") {
@@ -23,7 +23,7 @@ nextflow_pipeline {
             }
         }
 
-        then {6665
+        then {
             // stable_name: All files + folders in ${params.outdir}/ with a stable name
             def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])
             // stable_path: All files in ${params.outdir}/ with stable content

Original file line number	Diff line number	Diff line change
`@@ -2,7 +2,7 @@ nextflow_pipeline {`
`2`	`2`
`3`	`3`	`name "Test Workflow main.nf - DIFFERENTIALABUNDANCE"`
`4`	`4`	`script "../main.nf"`
`5`		`- tag "paramset"`
	`5`	`+ tag "custom_paramsheet"`
`6`	`6`	`tag "pipeline"`
`7`	`7`
`8`	`8`	`test("Test profile - deseq2") {`
`@@ -23,7 +23,7 @@ nextflow_pipeline {`
`23`	`23`	`}`
`24`	`24`	`}`
`25`	`25`
`26`		`- then {6665`
	`26`	`+ then {`
`27`	`27`	`// stable_name: All files + folders in ${params.outdir}/ with a stable name`
`28`	`28`	`def stable_name = getAllFilesFromDir(params.outdir, relative: true, includeDir: true, ignore: ['pipeline_info/*.{html,json,txt}'])`
`29`	`29`	`// stable_path: All files in ${params.outdir}/ with stable content`