Update snapsohts

Author: antoniasaracco

tests/test_custom_paramsheet.nf.test.snap

@@ -653,14 +653,6 @@
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
                 "versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
                 "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
-                "deseq2_treatment_mCherry_hND6__SRP254919_consensus_estimate_decoupler.tsv:md5,a5b3e2745923318cff953529fe00cfbc",
-                "deseq2_treatment_mCherry_hND6__SRP254919_consensus_pvals_decoupler.tsv:md5,c58f9399180f3bdb5f04836a369141f6",
-                "deseq2_treatment_mCherry_hND6__SRP254919_ulm_estimate_decoupler.tsv:md5,4b6b14af105495b54dda2750b9bc8ec5",
-                "deseq2_treatment_mCherry_hND6__SRP254919_ulm_pvals_decoupler.tsv:md5,d16c790c3d211151430d55df668198cc",
-                "deseq2_treatment_mCherry_hND6_sample_number_SRP254919_consensus_estimate_decoupler.tsv:md5,18cb93ab94c5735ee765a9ffacc339d5",
-                "deseq2_treatment_mCherry_hND6_sample_number_SRP254919_consensus_pvals_decoupler.tsv:md5,1d860e604f24b39c470b82a428536073",
-                "deseq2_treatment_mCherry_hND6_sample_number_SRP254919_ulm_estimate_decoupler.tsv:md5,c7f41fb7362e0fbf06a8ea1fd5557211",
-                "deseq2_treatment_mCherry_hND6_sample_number_SRP254919_ulm_pvals_decoupler.tsv:md5,2e97f82245826902fce3745de5ac4826",
                 "treatment_mCherry_hND6__SRP254919.deseq2.results.tsv:md5,a6dde65d9e54e8e80e3abf3c14f72d34",
                 "treatment_mCherry_hND6__SRP254919.deseq2.results_filtered.tsv:md5,fd803a83c641e843830057f3a43be27a",
                 "treatment_mCherry_hND6_sample_number_SRP254919.deseq2.results.tsv:md5,3c827ffb53fe7dab8f13f0ef89a3da06",
@@ -674,6 +666,6 @@
             "nf-test": "0.9.2",
             "nextflow": "25.04.7"
         },
-        "timestamp": "2025-09-22T20:59:16.34498681"
+        "timestamp": "2025-09-23T15:09:25.370491719"
     }
 }

tests/test_rnaseq_dream.nf.test.snap

@@ -163,25 +163,13 @@
                 "tables/differential/treatment_plus_genotype_SRP254919.dream.results_filtered.tsv"
             ],
             [
-                "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
-                "dream_full_model_with_interactions_SRP254919_consensus_estimate_decoupler.tsv:md5,e362db3b7988a6cff9138c1f3f04e158",
-                "dream_full_model_with_interactions_SRP254919_consensus_pvals_decoupler.tsv:md5,e0a6f2bac31c0009492607ffffe039b3",
-                "dream_full_model_with_interactions_SRP254919_ulm_estimate_decoupler.tsv:md5,a4647244f62228f23dd181708ba524cb",
-                "dream_full_model_with_interactions_SRP254919_ulm_pvals_decoupler.tsv:md5,c90af52101c49619540ac20adbdd4073",
-                "dream_interaction_genotype_treatment_SRP254919_consensus_estimate_decoupler.tsv:md5,568545acb5825c2cf97a8c39462db454",
-                "dream_interaction_genotype_treatment_SRP254919_consensus_pvals_decoupler.tsv:md5,efb57ded7d4f4c3256759cef4eddab57",
-                "dream_interaction_genotype_treatment_SRP254919_ulm_estimate_decoupler.tsv:md5,33f600b2fbc46b9c7db4bd5c052b4be0",
-                "dream_interaction_genotype_treatment_SRP254919_ulm_pvals_decoupler.tsv:md5,585b6c763eb86100f166adcb87a6ac7a",
-                "dream_treatment_plus_genotype_SRP254919_consensus_estimate_decoupler.tsv:md5,32063dfe8ad7dd2a7fc36144b821150c",
-                "dream_treatment_plus_genotype_SRP254919_consensus_pvals_decoupler.tsv:md5,e248178dd7d51916e088d3666d6435bd",
-                "dream_treatment_plus_genotype_SRP254919_ulm_estimate_decoupler.tsv:md5,8337f5394f2bca6411f8e42fb51ea015",
-                "dream_treatment_plus_genotype_SRP254919_ulm_pvals_decoupler.tsv:md5,d49131ebbabc8ddc737c106b60d41f7a"
+                "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.7"
         },
-        "timestamp": "2025-09-22T21:26:00.353247592"
+        "timestamp": "2025-09-23T15:46:34.43412188"
     }
 }

tests/test_rnaseq_limma.nf.test.snap

@@ -107,22 +107,14 @@
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
                 "versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
                 "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
-                "limma_treatment_mCherry_hND6__SRP254919_consensus_estimate_decoupler.tsv:md5,a620d9e50bb80a940a1d625c156db57d",
-                "limma_treatment_mCherry_hND6__SRP254919_consensus_pvals_decoupler.tsv:md5,0277a05f838537294818d929a00f3a51",
-                "limma_treatment_mCherry_hND6__SRP254919_ulm_estimate_decoupler.tsv:md5,93e9f630eeb2b18aa7f9ee8368f87ae9",
-                "limma_treatment_mCherry_hND6__SRP254919_ulm_pvals_decoupler.tsv:md5,5126f48f59bf1043076699f0677700bd",
-                "limma_treatment_mCherry_hND6_sample_number_SRP254919_consensus_estimate_decoupler.tsv:md5,40d606009fd45e6e905b5c0284df720e",
-                "limma_treatment_mCherry_hND6_sample_number_SRP254919_consensus_pvals_decoupler.tsv:md5,b58b5606148076511354925719d2476c",
-                "limma_treatment_mCherry_hND6_sample_number_SRP254919_ulm_estimate_decoupler.tsv:md5,9156bed5878264a8ca2d543b3d2b73cf",
-                "limma_treatment_mCherry_hND6_sample_number_SRP254919_ulm_pvals_decoupler.tsv:md5,b1eebaaa790893da0af00dc311a09236",
                 "all.normalised_counts.tsv:md5,534f0f37e10325163656cad95418f34a"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.7"
         },
-        "timestamp": "2025-09-22T21:38:20.091516183"
+        "timestamp": "2025-09-23T15:34:38.011606918"
     },
     "Test rnaseq limma profile": {
         "content": [