revert publishdir

Author: SusiJo

conf/modules.config

@@ -378,14 +378,9 @@ process {
 
         publishDir = [
             [
-                path: { "${params.outdir}/plots/gsea/${meta.id}/${gene_sets.baseName}" },
+                path: { "${params.outdir}/report/gsea/${meta.id}/${gene_sets.baseName}" },
                 mode: params.publish_dir_mode,
-                pattern: '*.{html,zip,png,rpt}'
-            ],
-            [
-                path: { "${params.outdir}/tables/gsea/${meta.id}/${gene_sets.baseName}" },
-                mode: params.publish_dir_mode,
-                pattern: '*.tsv'
+                pattern: '*.{html,zip,png,tsv,rpt}'
             ],
         ]
         ext.args = { [