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antoniasaraccoantoniasaracco
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update snapshots + ignore
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-38
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3 files changed

+21
-38
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‎tests/.nftignore‎

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@@ -15,8 +15,10 @@ shinyngs_app/**/data.rds
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**/**/*.dds.rld.rds
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*.limma.rds
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**/**/*.limma.rds
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*.{limma,dream}.{results,results_filtered}.tsv
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**/**/*.{limma,dream}.{results,results_filtered}.tsv
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*.{limma,dream}.{results,results_filtered,annotated}.tsv
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**/**/*.{limma,dream}.{results,results_filtered,annotated}.tsv
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*_{limma,dream}.annotated.tsv
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**/**/*_{limma,dream}.annotated.tsv
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tables/differential/treatment_plus_genotype_SRP254919.deseq2.results.tsv
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tables/differential/treatment_plus_genotype_SRP254919.deseq2.results_filtered.tsv
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tables/differential/treatment_plus_genotype_SRP254919.deseq2.annotated.tsv

‎tests/test_rnaseq_dream.nf.test.snap‎

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"tables/differential/treatment_plus_genotype_SRP254919_dream.annotated.tsv"
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],
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[
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
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"full_model_with_interactions_SRP254919_dream.annotated.tsv:md5,f37fd73799d22730b82c9471dfc1b511",
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"interaction_genotype_treatment_SRP254919_dream.annotated.tsv:md5,d12424fc582700f72ce5d5890a282a14",
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"treatment_plus_genotype_SRP254919_dream.annotated.tsv:md5,b46dfa30a13aa32e1ac979c6d0a88200"
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.7"
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"nextflow": "25.04.8"
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},
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"timestamp": "2025-10-06T19:14:05.188594067"
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"timestamp": "2025-10-07T11:14:46.216067978"
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},
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"Test rnaseq dream profile - complex contrast": {
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"content": [
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"tables/differential/treatment_plus_genotype_SRP254919_dream.annotated.tsv"
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],
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[
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
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"full_model_with_interactions_SRP254919_dream.annotated.tsv:md5,f37fd73799d22730b82c9471dfc1b511",
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"interaction_genotype_treatment_SRP254919_dream.annotated.tsv:md5,d12424fc582700f72ce5d5890a282a14",
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"treatment_plus_genotype_SRP254919_dream.annotated.tsv:md5,b46dfa30a13aa32e1ac979c6d0a88200"
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nextflow": "25.04.8"
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},
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"timestamp": "2025-10-03T14:23:03.908652158"
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"timestamp": "2025-10-07T11:16:04.26172473"
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},
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"Test rnaseq dream profile - with decoupler": {
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"content": [
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"tables/differential/treatment_plus_genotype_SRP254919_dream.annotated.tsv"
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],
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[
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
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"full_model_with_interactions_SRP254919_dream.annotated.tsv:md5,f37fd73799d22730b82c9471dfc1b511",
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"interaction_genotype_treatment_SRP254919_dream.annotated.tsv:md5,d12424fc582700f72ce5d5890a282a14",
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"treatment_plus_genotype_SRP254919_dream.annotated.tsv:md5,b46dfa30a13aa32e1ac979c6d0a88200"
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nextflow": "25.04.8"
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},
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"timestamp": "2025-10-03T14:28:52.00036642"
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"timestamp": "2025-10-07T11:20:29.155475939"
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}
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}

‎tests/test_rnaseq_limma.nf.test.snap‎

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"app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
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"versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
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"treatment_mCherry_hND6__SRP254919_limma.annotated.tsv:md5,ab158de12550bd58da81a904edb5481c",
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"treatment_mCherry_hND6_sample_number_SRP254919_limma.annotated.tsv:md5,fe2c755adeba7f49f226e0f6d3e47d28",
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"all.normalised_counts.tsv:md5,534f0f37e10325163656cad95418f34a"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nextflow": "25.04.8"
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},
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"timestamp": "2025-10-03T14:19:02.418566284"
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"timestamp": "2025-10-07T11:47:32.359742751"
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},
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"Test rnaseq limma profile": {
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"content": [
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"app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
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"versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
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"treatment_mCherry_hND6__SRP254919_limma.annotated.tsv:md5,ab158de12550bd58da81a904edb5481c",
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"treatment_mCherry_hND6_sample_number_SRP254919_limma.annotated.tsv:md5,fe2c755adeba7f49f226e0f6d3e47d28",
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"all.normalised_counts.tsv:md5,534f0f37e10325163656cad95418f34a"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nextflow": "25.04.8"
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},
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"timestamp": "2025-10-03T14:07:06.924758331"
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"timestamp": "2025-10-07T11:29:37.28069351"
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},
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"Test rnaseq limma profile - with formula and complex contrasts": {
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"content": [
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"app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
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"versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
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"full_model_with_interactions_SRP254919_limma.annotated.tsv:md5,16c9850d362d222dee43c71a965ec44b",
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"interaction_genotype_treatment_SRP254919_limma.annotated.tsv:md5,87a4d0fcf9133300b22528a4a9694be2",
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"treatment_effect_classic_comparison_SRP254919_limma.annotated.tsv:md5,6a8a0bd35c6c7202ed1d57e0dfa27fa8",
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"treatment_plus_genotype_SRP254919_limma.annotated.tsv:md5,922b6a9697adefbb61b909c58de30f72",
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"all.normalised_counts.tsv:md5,ebe30cc05e93aea1f04ee8598ec62c94"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nextflow": "25.04.8"
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},
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"timestamp": "2025-10-03T14:13:25.270079912"
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"timestamp": "2025-10-07T11:42:49.759344229"
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},
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"Test rnaseq limma profile - with toolsheet": {
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"content": [
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"app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
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"versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
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"SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
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"treatment_mCherry_hND6__SRP254919_limma.annotated.tsv:md5,ab158de12550bd58da81a904edb5481c",
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"treatment_mCherry_hND6_sample_number_SRP254919_limma.annotated.tsv:md5,fe2c755adeba7f49f226e0f6d3e47d28",
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"all.normalised_counts.tsv:md5,534f0f37e10325163656cad95418f34a"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nextflow": "25.04.8"
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},
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"timestamp": "2025-10-03T14:09:29.088613962"
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"timestamp": "2025-10-07T11:39:28.037405895"
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}
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}

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