update snapshots and remove gsea from dream test

Author: suzannejin

tests/test_rnaseq_dream.nf.test

@@ -11,7 +11,7 @@ nextflow_pipeline {
         when {
             params {
                 outdir              = "$outputDir"
-                paramset_name       = "dream_rnaseq_gsea"
+                paramset_name       = "dream_rnaseq"
                 differential_method = null
                 functional_method   = null
             }

tests/test_rnaseq_dream.nf.test.snap

@@ -1,14 +1,25 @@
 {
     "Test rnaseq dream profile - with toolsheet": {
         "content": [
-            2,
+            10,
             {
+                "CUSTOM_FILTERDIFFERENTIALTABLE": {
+                    "pandas": "1.5.2"
+                },
                 "GTF_TO_TABLE": {
                     "atlas-gene-annotation-manipulation": "1.1.1"
                 },
                 "GUNZIP_GTF": {
                     "gunzip": 1.1
                 },
+                "VALIDATOR": {
+                    "r-shinyngs": "2.2.4"
+                },
+                "VARIANCEPARTITION_DREAM": {
+                    "r-base": "4.3.3",
+                    "bioconductor-edger": "4.0.16",
+                    "variancePartition": "1.32.2"
+                },
                 "Workflow": {
                     "nf-core/differentialabundance": "v1.6.0dev"
                 }
@@ -19,17 +30,30 @@
                 "pipeline_info/nf_core_differentialabundance_software_versions.yml",
                 "tables",
                 "tables/annotation",
-                "tables/annotation/SRP254919.anno.tsv"
+                "tables/annotation/SRP254919.anno.tsv",
+                "tables/differential",
+                "tables/differential/full_model_with_interactions_SRP254919.dream.results.tsv",
+                "tables/differential/full_model_with_interactions_SRP254919.dream.results_filtered.tsv",
+                "tables/differential/interaction_genotype_treatment_SRP254919.dream.results.tsv",
+                "tables/differential/interaction_genotype_treatment_SRP254919.dream.results_filtered.tsv",
+                "tables/differential/treatment_plus_genotype_SRP254919.dream.results.tsv",
+                "tables/differential/treatment_plus_genotype_SRP254919.dream.results_filtered.tsv"
             ],
             [
-                "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb"
+                "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
+                "full_model_with_interactions_SRP254919.dream.results.tsv:md5,75e9a1dd2e967a01469214c1b8434feb",
+                "full_model_with_interactions_SRP254919.dream.results_filtered.tsv:md5,114a0af94613a9c218862086b6c2bb4a",
+                "interaction_genotype_treatment_SRP254919.dream.results.tsv:md5,8b1912c8bb50dc8e01baedbddf08c4e9",
+                "interaction_genotype_treatment_SRP254919.dream.results_filtered.tsv:md5,2882175ce3930af457addbe732309bee",
+                "treatment_plus_genotype_SRP254919.dream.results.tsv:md5,8bca571a727671b0bb2879ee27b87c23",
+                "treatment_plus_genotype_SRP254919.dream.results_filtered.tsv:md5,334f9459e1262b26b00d8b790be89446"
             ]
         ],
         "meta": {
             "nf-test": "0.9.2",
             "nextflow": "25.04.2"
         },
-        "timestamp": "2025-05-19T15:15:37.080602433"
+        "timestamp": "2025-05-29T12:06:03.826977496"
     },
     "Test rnaseq dream profile - complex contrast": {
         "content": [
@@ -87,4 +111,4 @@
         },
         "timestamp": "2025-05-19T15:17:55.475327757"
     }
-}
+}