Fix path to report files in default test

delfiterradas · delfiterradas · commit 7af2a6126cd7 · 2025-09-29T13:50:16.000Z
diff --git a/tests/default.nf.test b/tests/default.nf.test
@@ -148,7 +148,7 @@ nextflow_pipeline {
                 outdir        = "$outputDir"
                 contrasts_yml = null
                 contrasts     = "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/mus_musculus/rnaseq_expression/SRP254919.contrasts.csv"
-                report_file   = "/workspace/differentialabundance/assets/quarto.qmd,/workspace/differentialabundance/assets/differentialabundance_report.qmd"
+                report_file   = "$projectDir/assets/quarto.qmd,$projectDir/assets/differentialabundance_report.qmd"
             }
         }
 

Original file line number	Diff line number	Diff line change
`@@ -148,7 +148,7 @@ nextflow_pipeline {`
`148`	`148`	`outdir = "$outputDir"`
`149`	`149`	`contrasts_yml = null`
`150`	`150`	`contrasts = "https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/mus_musculus/rnaseq_expression/SRP254919.contrasts.csv"`
`151`		`- report_file = "/workspace/differentialabundance/assets/quarto.qmd,/workspace/differentialabundance/assets/differentialabundance_report.qmd"`
	`151`	`+ report_file = "$projectDir/assets/quarto.qmd,$projectDir/assets/differentialabundance_report.qmd"`
`152`	`152`	`}`
`153`	`153`	`}`
`154`	`154`