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lines changed Original file line number Diff line number Diff line change @@ -104,6 +104,7 @@ nextflow_pipeline {
104104 outdir = "$outputDir"
105105 differential_method = 'deseq2'
106106 functional_method = 'gprofiler2'
107+ gprofiler2_organism = 'mmusculus'
107108 input = 'https://github.com/nf-core/test-datasets/raw/differentialabundance/modules_testdata/variancepartition_dream/metadata.tsv'
108109 matrix = 'https://github.com/nf-core/test-datasets/raw/differentialabundance/modules_testdata/variancepartition_dream/counts.tsv'
109110 contrasts_yml = 'https://github.com/nf-core/test-datasets/raw/differentialabundance/testdata/formula_contrasts/rnaseq_complex_contrast.yaml'
Original file line number Diff line number Diff line change @@ -90,6 +90,7 @@ nextflow_pipeline {
9090 outdir = "$outputDir"
9191 paramsheet = "https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/differentialabundance/testdata/test_custom_paramsheet.csv"
9292 paramset_name = "gprofiler2"
93+ gprofiler2_organism = 'mmusculus'
9394
9495 // input data
9596 input = 'https://raw.githubusercontent.com/nf-core/test-datasets/modules/data/genomics/mus_musculus/rnaseq_expression/SRP254919.samplesheet.csv'
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