update snapshots

Author: SusiJo

tests/.nftignore

@@ -1,5 +1,5 @@
 pipeline_info/*.{html,json,txt,yml}
-report/gsea/**/*.symbols.Gsea.rpt
+plots/gsea/**/*.{rpt,html,png}
 report/*.html
 report/*.zip
 report/*.png

tests/default.nf.test.snap

@@ -167,22 +167,6 @@
                 "treatment_mCherry_hND6_sample_number_SRP254919.deseq2.sizefactors.tsv:md5,0703c421c53b260f91568dfc0436c054",
                 "versions.yml:md5,225ced8832439345efa781c726cf2e5c",
                 "versions.yml:md5,d5f6ad8fe6242dcd75bc62b654d1d211",
-                "gene_sets_treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.HALLMARK_KRAS_SIGNALING_DN.html:md5,d7ff9935148862c6e927237e7745b23d",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.Gsea.rpt:md5,bdd5c05854e14b71bf3933b06721dcd4",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_hND6.html:md5,4ed411bcebc2f2e5bbc66d0a5f097196",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_mCherry.html:md5,e5a08fbf656445a0876a2916cf6e5f73",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.heat_map_corr_plot.html:md5,65df68322e6271be76fcd717fb97be81",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.index.html:md5,6132019fe2beb980e79876505787d747",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.neg_snapshot.html:md5,4c94fe74c22cb1e969866a7a81a31fe7",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.pos_snapshot.html:md5,f23f32b61ed1a7b15266bb63ad6f796d",
-                "gene_sets_treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.HALLMARK_KRAS_SIGNALING_DN.html:md5,5577e6d679f032597bf315295f2283ee",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.Gsea.rpt:md5,a1b8c4a0364a2e9a0e06d8a677ff9050",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_hND6.html:md5,ecd9ad23856cc23fca7c033908fd4e45",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_mCherry.html:md5,e6375be46a100fc9da3bd44645f9f74d",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.heat_map_corr_plot.html:md5,1826dca12418a661de42e23a9920d6f9",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.index.html:md5,1aa009c9d3f509117fc570546a6d74e2",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.neg_snapshot.html:md5,f9587089c6b0406195dc48bb94f9a846",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.pos_snapshot.html:md5,6c4cc27e155ea2e5856c6113be228cd7",
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
                 "versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
                 "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
@@ -209,9 +193,9 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-07-29T16:30:31.649506725"
+        "timestamp": "2025-08-01T11:53:42.505245964"
     },
     "Test profile - with toolsheet": {
         "content": [
@@ -381,22 +365,6 @@
                 "treatment_mCherry_hND6_sample_number_SRP254919.deseq2.sizefactors.tsv:md5,0703c421c53b260f91568dfc0436c054",
                 "versions.yml:md5,225ced8832439345efa781c726cf2e5c",
                 "versions.yml:md5,d5f6ad8fe6242dcd75bc62b654d1d211",
-                "gene_sets_treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.HALLMARK_KRAS_SIGNALING_DN.html:md5,d7ff9935148862c6e927237e7745b23d",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.Gsea.rpt:md5,918580d82d6424c1c25a9da4da18dbb7",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_hND6.html:md5,ded8b400d0fa1e839ab246938a742ffd",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_mCherry.html:md5,3d630ac1d8305234260cb76eaaba4564",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.heat_map_corr_plot.html:md5,65df68322e6271be76fcd717fb97be81",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.index.html:md5,5e301344b3aec4d781b2b42a224e0143",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.neg_snapshot.html:md5,4c94fe74c22cb1e969866a7a81a31fe7",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.pos_snapshot.html:md5,f23f32b61ed1a7b15266bb63ad6f796d",
-                "gene_sets_treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.HALLMARK_KRAS_SIGNALING_DN.html:md5,5577e6d679f032597bf315295f2283ee",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.Gsea.rpt:md5,67a3fc8f4b754c19e4e99f90e9c89f12",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_hND6.html:md5,2dec3044d51460ecb44d2c696e1aa835",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_mCherry.html:md5,9b2df78effb58410250e26a1c7fee928",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.heat_map_corr_plot.html:md5,1826dca12418a661de42e23a9920d6f9",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.index.html:md5,38917faae5e5ab5e02b042c47adb11cc",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.neg_snapshot.html:md5,f9587089c6b0406195dc48bb94f9a846",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.pos_snapshot.html:md5,6c4cc27e155ea2e5856c6113be228cd7",
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
                 "versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
                 "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
@@ -423,9 +391,9 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-07-29T16:29:15.957467092"
+        "timestamp": "2025-08-01T11:52:22.524570781"
     },
     "Test profile - with toolsheet and formula": {
         "content": [
@@ -750,22 +718,6 @@
                 "treatment_mCherry_hND6_sample_number_SRP254919.deseq2.sizefactors.tsv:md5,0703c421c53b260f91568dfc0436c054",
                 "versions.yml:md5,225ced8832439345efa781c726cf2e5c",
                 "versions.yml:md5,d5f6ad8fe6242dcd75bc62b654d1d211",
-                "gene_sets_treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.HALLMARK_KRAS_SIGNALING_DN.html:md5,d7ff9935148862c6e927237e7745b23d",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.Gsea.rpt:md5,d9780814a6837e4fbd299af3a25e3e02",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_hND6.html:md5,702211854705f76a9da1d5931b80dc77",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_mCherry.html:md5,09fc82d43fb38c33a0298791af76d7b5",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.heat_map_corr_plot.html:md5,65df68322e6271be76fcd717fb97be81",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.index.html:md5,25c6f2039c3632f467226593eaab9f52",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.neg_snapshot.html:md5,4c94fe74c22cb1e969866a7a81a31fe7",
-                "treatment_mCherry_hND6__SRP254919.mh.all.v2022.1.Mm.symbols.pos_snapshot.html:md5,f23f32b61ed1a7b15266bb63ad6f796d",
-                "gene_sets_treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.HALLMARK_KRAS_SIGNALING_DN.html:md5,5577e6d679f032597bf315295f2283ee",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.Gsea.rpt:md5,a4c8c78ce678dae421c7e4ebee3983ce",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_hND6.html:md5,3bb7ea6d8b4467e1a8794faec0b8a914",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.gsea_report_for_mCherry.html:md5,671c6cdfc5bbc2e16e1879ace6ac65f5",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.heat_map_corr_plot.html:md5,1826dca12418a661de42e23a9920d6f9",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.index.html:md5,abc92c8e2a423081229583a6ddf018fd",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.neg_snapshot.html:md5,f9587089c6b0406195dc48bb94f9a846",
-                "treatment_mCherry_hND6_sample_number_SRP254919.mh.all.v2022.1.Mm.symbols.pos_snapshot.html:md5,6c4cc27e155ea2e5856c6113be228cd7",
                 "app.R:md5,bedcfc45b6cdcc2b8fe3627987e2b17a",
                 "versions.yml:md5,b3436c10ff83d0dab55060de3cae3ef2",
                 "SRP254919.anno.tsv:md5,c1d7f21e64bd00f845ec6545c123a1fb",
@@ -792,8 +744,8 @@
         ],
         "meta": {
             "nf-test": "0.9.2",
-            "nextflow": "25.04.6"
+            "nextflow": "25.04.3"
         },
-        "timestamp": "2025-07-29T16:31:46.777046985"
+        "timestamp": "2025-08-01T11:55:01.78270169"
     }
 }