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Fix prettier
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nextflow_schema.json

Lines changed: 4 additions & 22 deletions
Original file line numberDiff line numberDiff line change
@@ -10,10 +10,7 @@
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"type": "object",
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"fa_icon": "fas fa-terminal",
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"description": "Define where the pipeline should find input data and save output data.",
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"required": [
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"input",
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"outdir"
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],
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"required": ["input", "outdir"],
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"properties": {
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"input": {
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"type": "string",
@@ -29,10 +26,7 @@
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"default": "sra",
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"description": "Specifies the type of identifier provided via `--input` - available options are 'sra' and 'synapse'.",
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"fa_icon": "fas fa-keyboard",
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"enum": [
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"sra",
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"synapse"
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]
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"enum": ["sra", "synapse"]
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},
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"ena_metadata_fields": {
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"type": "string",
@@ -50,12 +44,7 @@
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"type": "string",
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"fa_icon": "fab fa-apple",
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"description": "Name of supported nf-core pipeline e.g. 'rnaseq'. A samplesheet for direct use with the pipeline will be created with the appropriate columns.",
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"enum": [
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"rnaseq",
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"atacseq",
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"viralrecon",
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"taxprofiler"
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]
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"enum": ["rnaseq", "atacseq", "viralrecon", "taxprofiler"]
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},
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"nf_core_rnaseq_strandedness": {
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"type": "string",
@@ -204,14 +193,7 @@
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"description": "Method used to save pipeline results to output directory.",
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"help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.",
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"fa_icon": "fas fa-copy",
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"enum": [
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"symlink",
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"rellink",
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"link",
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"copy",
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"copyNoFollow",
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"move"
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],
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"enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"],
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"hidden": true
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},
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"email_on_fail": {

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