wip

bentsherman · bentsherman · commit b9174ae6cb8c · 2025-04-29T12:26:03.000-05:00
Signed-off-by: Ben Sherman &lt;bentshermann@gmail.com&gt;
diff --git a/workflows/sra/main.nf b/workflows/sra/main.nf
@@ -41,6 +41,7 @@ workflow SRA {
     //
     runinfo_ftp = runinfo.map(SRA_RUNINFO_TO_FTP)
 
+    // TODO: define record type(s) for expected meta-map
     sra_metadata = runinfo_ftp.scatter { tsv ->
         tsv.splitCsv(header:true, sep:'\t').unique()
     }

Original file line number	Diff line number	Diff line change
`@@ -41,6 +41,7 @@ workflow SRA {`
`41`	`41`	`//`
`42`	`42`	`runinfo_ftp = runinfo.map(SRA_RUNINFO_TO_FTP)`
`43`	`43`
	`44`	`+ // TODO: define record type(s) for expected meta-map`
`44`	`45`	`sra_metadata = runinfo_ftp.scatter { tsv ->`
`45`	`46`	`tsv.splitCsv(header:true, sep:'\t').unique()`
`46`	`47`	`}`