Skip to content

MATPLOTLIB warning derails parsing cooltools version in collated_versions.yml during NFCORE_HIC:HIC:CUSTOM_DUMPSOFTWAREVERSIONS #227

@leipzig

Description

@leipzig

Description of the bug

  "NFCORE_HIC:HIC:TADS:COOLTOOLS_INSULATION":
      cooltools: Matplotlib created a temporary config/cache directory at /tmp/matplotlib-203xiirt because the default path (/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable
  directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
  0.5.1

results in:

yaml.scanner.ScannerError: while scanning a simple key
      in "collated_versions.yml", line 29, column 1
    could not find expected ':'

Command used and terminal output

nextflow run nf-core/hic -profile docker,test -work-dir s3://mybucket/wd --outdir s3://mybucket/od -resume

Relevant files

No response

System information

Nextflow version 25.04.3
Launching `https://github.com/nf-core/hic` [dreamy_elion] DSL2 - revision: fe4ac65631 [master]
nf-core/hic v2.1.0-gfe4ac65

Metadata

Metadata

Assignees

No one assigned

    Labels

    bugSomething isn't working

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions