The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
Initial release of nf-core/lsmquant, created with the nf-core template.
The main functionalities of the NuMorph toolbox are added up until the nuclei quantification via a 3DUnet
local Modules:
- numorphintensity
- numorphalign
- numorphstitch
- numorphresample
- numorphregister
- numorph3dunet
- mat2json
- stagefiles
nf-core Modules:
- multiqc
- unzip
local subworkflows:
- numorphpreprocessing:
- numorphintensity
- numorphalign
- numorphstitch
- mat2json
- ara-registration
- numorphresample
- numorphregister
- mat2json
Custom numorph container numorphpreprocessing, numorphanalyze, mat2json, and numorph3dunetare on the nf-core quay io repository. Compiled matlab application numorph_preprocessing, mat2json and the source code for the 3Dunet python package are public repositories. The source code of the tools are found here NuMorph_dev