Description of the bug
Complex mods are not correctly stripped such as
| peptidoform |
sequence |
| FL(Label:13C(6)15N(1))ASSEGGFTK |
FL(13C(6)15N(1))ASSEGGFTK |
I specified --variable_mods 'Oxidation (M),Label:13C(6)15N(1) (L)' as CLI flag
we might need to use pyopens functionality to deal with this