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Updating Parabricks rnafq2bam module for compatibility with the rnaseq pipeline #12889

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Updating Parabricks rnafq2bam module for compatibility with the rnaseq pipeline

Updating Parabricks rnafq2bam module for compatibility with the rnaseq pipeline #12889

Triggered via pull request February 6, 2026 18:47
@gburnett-nvidiagburnett-nvidia
synchronize #9925
gburnett-nvidia:parabricks_rnafq2bam_rnaseq_updates
Status Failure
Total duration 8m 24s
Artifacts –

nf-test-gpu.yml

on: pull_request
nf-test-changes
48s
nf-test-changes
Matrix: nf-test-gpu
confirm-pass-gpu
6s
confirm-pass-gpu
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5 errors and 5 warnings
GPU Test | docker | 2
Process completed with exit code 1.
GPU Test | docker | 1
Process completed with exit code 1.
GPU Test | singularity | 2
Process completed with exit code 1.
GPU Test | singularity | 1
Process completed with exit code 1.
confirm-pass-gpu
Process completed with exit code 1.
nf-test-changes
The process '/usr/bin/git' failed with exit code 128
GPU Test | docker | 2
The process '/usr/bin/git' failed with exit code 128
GPU Test | docker | 1
The process '/usr/bin/git' failed with exit code 128
GPU Test | singularity | 2
The process '/usr/bin/git' failed with exit code 128
GPU Test | singularity | 1
The process '/usr/bin/git' failed with exit code 128