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jkh00
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ra25wog
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update Modkit/pileup version (#9297)
* changed to correct labelling * update version * update version --------- Co-authored-by: ra25wog <[email protected]>
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‎modules/nf-core/modkit/pileup/environment.yml‎

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@@ -4,4 +4,4 @@ channels:
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- conda-forge
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- bioconda
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dependencies:
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- ont-modkit=0.4.4
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- ont-modkit=0.5.0

‎modules/nf-core/modkit/pileup/main.nf‎

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@@ -4,8 +4,8 @@ process MODKIT_PILEUP {
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conda "${moduleDir}/environment.yml"
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container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
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'https://depot.galaxyproject.org/singularity/ont-modkit:0.4.4--hcdda2d0_0':
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'biocontainers/ont-modkit:0.4.4--hcdda2d0_0' }"
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'https://depot.galaxyproject.org/singularity/ont-modkit:0.5.0--hcdda2d0_2':
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'biocontainers/ont-modkit:0.5.0--hcdda2d0_2' }"
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input:
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tuple val(meta), path(bam), path(bai)

‎modules/nf-core/modkit/pileup/tests/main.nf.test.snap‎

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],
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"3": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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],
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"bed": [
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[
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],
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"versions": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:01:47.27240322"
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"timestamp": "2025-10-29T13:33:40.323944879"
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},
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"[bam, bai], [fasta, fai], [] - stub": {
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"content": [
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]
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],
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"3": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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],
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"bed": [
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[
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]
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],
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"versions": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:02:14.786526107"
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"timestamp": "2025-10-29T13:34:25.818328219"
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},
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"[bam, bai], [fasta, fai], bed - traditional, HP, bedgraph": {
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"content": [
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],
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"3": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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],
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"bed": [
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],
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"versions": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:02:04.393035124"
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"timestamp": "2025-10-29T13:34:09.480034362"
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},
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"[bam, bai], [fasta, fai], bed - traditional, HP": {
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"content": [
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],
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"3": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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],
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"bed": [
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],
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"versions": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:01:58.76489375"
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"timestamp": "2025-10-29T13:34:01.652042889"
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},
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"[bam, bai], [fasta, fai], []": {
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"content": [
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],
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"3": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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],
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"bed": [
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],
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"versions": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:01:41.559902964"
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"timestamp": "2025-10-29T13:33:30.820830386"
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},
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"[bam, bai], [fasta, fai], bed - traditional, HP - stub": {
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]
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],
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"3": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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],
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"bed": [
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]
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"versions": [
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:02:31.123304033"
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"timestamp": "2025-10-29T13:34:51.355845894"
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},
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"[bam, bai], [], []": {
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],
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"3": [
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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"versions": [
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"versions.yml:md5,8527c1177696459470aef23905cfb6af"
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:01:35.512266692"
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"timestamp": "2025-10-29T13:33:22.654774712"
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},
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"[bam, bai], [fasta, fai], bed - traditional, HP, bedgraph - stub": {
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"versions.yml:md5,3c84f12b2a56c95c51a1d0b6b07fb33a"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "24.10.5"
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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},
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"timestamp": "2025-04-15T15:02:37.027692372"
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"timestamp": "2025-10-29T13:35:00.477494397"
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"versions": [
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"meta": {
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"nf-test": "0.9.2",
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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"timestamp": "2025-10-29T13:34:17.906798987"
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"meta": {
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"nf-test": "0.9.2",
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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"timestamp": "2025-10-29T13:34:42.242953279"
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"meta": {
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"nf-test": "0.9.2",
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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"timestamp": "2025-10-29T13:34:34.378006702"
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"meta": {
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"nf-test": "0.9.2",
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"nf-test": "0.9.3",
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"nextflow": "25.04.2"
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"timestamp": "2025-10-29T13:33:48.061931781"
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}
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}

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