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mribeirodantasmribeirodantas
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Updates snapshots for tests
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9 files changed

+169
-223
lines changed

9 files changed

+169
-223
lines changed

‎modules/nf-core/samtools/stats/tests/main.nf.test.snap‎

Lines changed: 56 additions & 24 deletions
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@@ -12,7 +12,11 @@
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]
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],
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"1": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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],
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"stats": [
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[
@@ -23,16 +27,20 @@
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"test.stats:md5,f4aec6c41b73d34ac2fc6b3253aa39ba"
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]
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],
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"versions": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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"versions_samtools": [
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-10T15:05:52.878044"
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"timestamp": "2025-11-01T02:27:18.460724"
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},
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"bam - stub": {
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"content": [
@@ -47,7 +55,11 @@
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]
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],
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"1": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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],
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"stats": [
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[
@@ -58,16 +70,20 @@
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"test.stats:md5,d41d8cd98f00b204e9800998ecf8427e"
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]
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],
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"versions": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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"versions_samtools": [
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-10T15:05:56.722672"
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"timestamp": "2025-11-01T02:27:30.245839"
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},
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"cram - stub": {
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"content": [
@@ -82,7 +98,11 @@
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]
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],
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"1": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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],
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"stats": [
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[
@@ -93,16 +113,20 @@
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"test.stats:md5,d41d8cd98f00b204e9800998ecf8427e"
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]
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],
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"versions": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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"versions_samtools": [
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-10T15:06:13.766719"
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"timestamp": "2025-11-01T02:27:39.041649"
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},
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"bam": {
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"content": [
@@ -117,7 +141,11 @@
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]
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],
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"1": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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],
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"stats": [
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[
@@ -128,15 +156,19 @@
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"test.stats:md5,41ba8ad30ddb598dadb177a54c222ab9"
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]
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],
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"versions": [
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"versions.yml:md5,7668882f411d0f6356f14a1b8b56fa3c"
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"versions_samtools": [
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[
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"SAMTOOLS_STATS",
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"samtools",
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"1.22.1"
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]
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-10T15:05:30.301153"
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"timestamp": "2025-11-01T02:26:55.988241"
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}
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}

‎subworkflows/nf-core/bam_dedup_stats_samtools_umicollapse/tests/main.nf.test.snap‎

Lines changed: 3 additions & 4 deletions
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@@ -22,15 +22,14 @@
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"versions.yml:md5,15a99b83c8965f9b29d0e9e6dbdef621",
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"versions.yml:md5,61bd927f2f2121e34d94692a62305955",
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"versions.yml:md5,657bce03545b4c57f9c5fc4314bf85f7",
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"versions.yml:md5,71d8ff70a0f65311659c446278f10b1a"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-10T13:32:36.702719"
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"timestamp": "2025-11-01T02:35:06.350407"
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},
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"test_bam_dedup_stats_samtools_umicollapse_flagstats": {
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"content": [

‎subworkflows/nf-core/bam_dedup_stats_samtools_umitools/tests/main.nf.test.snap‎

Lines changed: 8 additions & 11 deletions
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@@ -28,17 +28,16 @@
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],
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[
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"versions.yml:md5,0ebfc47a75bd075329a7434161100f8f",
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"versions.yml:md5,8170256bdee0615a3a9c3ad9f44c99d7",
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"versions.yml:md5,a8989d3d3bf9dde36a1d0664e54fccb5",
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"versions.yml:md5,c4d5d9b171cc7b206cb14f7043f16e45",
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"versions.yml:md5,e687e4e909255370121fcbec5a4299d1"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-11T09:42:03.400348"
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"timestamp": "2025-11-01T02:35:42.524116"
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},
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"sarscov2_bam_bai - stub": {
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"content": [
@@ -83,7 +82,7 @@
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{
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"id": "test"
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},
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"test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e"
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"test.flagstat:md5,67394650dbae96d1a4fcc70484822159"
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]
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],
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"6": [
@@ -96,7 +95,6 @@
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],
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"7": [
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"versions.yml:md5,0ebfc47a75bd075329a7434161100f8f",
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"versions.yml:md5,8170256bdee0615a3a9c3ad9f44c99d7",
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"versions.yml:md5,a8989d3d3bf9dde36a1d0664e54fccb5",
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"versions.yml:md5,c4d5d9b171cc7b206cb14f7043f16e45",
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"versions.yml:md5,e687e4e909255370121fcbec5a4299d1"
@@ -133,7 +131,7 @@
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{
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"id": "test"
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},
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"test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e"
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"test.flagstat:md5,67394650dbae96d1a4fcc70484822159"
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]
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],
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"idxstats": [
@@ -154,17 +152,16 @@
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],
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"versions": [
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"versions.yml:md5,0ebfc47a75bd075329a7434161100f8f",
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"versions.yml:md5,8170256bdee0615a3a9c3ad9f44c99d7",
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"versions.yml:md5,a8989d3d3bf9dde36a1d0664e54fccb5",
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"versions.yml:md5,c4d5d9b171cc7b206cb14f7043f16e45",
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"versions.yml:md5,e687e4e909255370121fcbec5a4299d1"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.6"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-11T09:42:13.338671"
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"timestamp": "2025-11-01T02:35:58.59434"
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}
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}

‎subworkflows/nf-core/bam_markduplicates_picard/tests/main.nf.test.snap‎

Lines changed: 16 additions & 22 deletions
Original file line numberDiff line numberDiff line change
@@ -9,16 +9,15 @@
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[
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"versions.yml:md5,492bf2c795ed7c31947f0390a5b6cbe1",
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"versions.yml:md5,53f9c88ce12ea1192cf2fb12cb3f980f",
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"versions.yml:md5,cccd7bb84a8caecd7558214c09f0a264",
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"versions.yml:md5,d298dab7f84d3fa45618d3be5c054a92",
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"versions.yml:md5,fb2919b16758582cf470a86acd1f1886"
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.7"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-15T10:56:16.015907189"
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"timestamp": "2025-11-01T02:37:26.3247"
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},
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"sarscov2 - bam - stub": {
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"content": [
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"id": "test",
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"single_end": false
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},
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"test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e"
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"test.flagstat:md5,67394650dbae96d1a4fcc70484822159"
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]
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],
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"8": [
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"9": [
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"versions.yml:md5,492bf2c795ed7c31947f0390a5b6cbe1",
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"versions.yml:md5,53f9c88ce12ea1192cf2fb12cb3f980f",
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"versions.yml:md5,cccd7bb84a8caecd7558214c09f0a264",
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"versions.yml:md5,d298dab7f84d3fa45618d3be5c054a92",
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"versions.yml:md5,fb2919b16758582cf470a86acd1f1886"
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],
@@ -126,7 +124,7 @@
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"id": "test",
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"single_end": false
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},
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"test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e"
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"test.flagstat:md5,67394650dbae96d1a4fcc70484822159"
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]
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],
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"idxstats": [
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"versions": [
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"versions.yml:md5,492bf2c795ed7c31947f0390a5b6cbe1",
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"versions.yml:md5,53f9c88ce12ea1192cf2fb12cb3f980f",
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"versions.yml:md5,cccd7bb84a8caecd7558214c09f0a264",
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"versions.yml:md5,d298dab7f84d3fa45618d3be5c054a92",
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"versions.yml:md5,fb2919b16758582cf470a86acd1f1886"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.7"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-15T10:56:28.143938191"
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"timestamp": "2025-11-01T02:37:50.805524"
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},
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"homo_sapiens - cram - stub": {
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"content": [
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{
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"id": "test"
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},
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"test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e"
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"test.flagstat:md5,67394650dbae96d1a4fcc70484822159"
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]
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],
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"8": [
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"9": [
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"versions.yml:md5,492bf2c795ed7c31947f0390a5b6cbe1",
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"versions.yml:md5,53f9c88ce12ea1192cf2fb12cb3f980f",
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"versions.yml:md5,cccd7bb84a8caecd7558214c09f0a264",
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"versions.yml:md5,d298dab7f84d3fa45618d3be5c054a92",
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"versions.yml:md5,fb2919b16758582cf470a86acd1f1886"
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],
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{
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"id": "test"
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},
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"test.flagstat:md5,d41d8cd98f00b204e9800998ecf8427e"
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"test.flagstat:md5,67394650dbae96d1a4fcc70484822159"
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]
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],
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"idxstats": [
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"versions": [
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"versions.yml:md5,492bf2c795ed7c31947f0390a5b6cbe1",
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"versions.yml:md5,53f9c88ce12ea1192cf2fb12cb3f980f",
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"versions.yml:md5,fb2919b16758582cf470a86acd1f1886"
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]
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}
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.7"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-15T10:56:40.395713551"
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"timestamp": "2025-11-01T02:38:18.069303"
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},
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"sarscov2 - bam": {
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"content": [
@@ -320,15 +315,14 @@
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[
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"versions.yml:md5,492bf2c795ed7c31947f0390a5b6cbe1",
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"versions.yml:md5,53f9c88ce12ea1192cf2fb12cb3f980f",
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]
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],
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"meta": {
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"nf-test": "0.9.2",
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"nextflow": "25.04.7"
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"nf-test": "0.9.3",
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"nextflow": "25.10.0"
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},
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"timestamp": "2025-09-15T10:56:01.213524305"
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"timestamp": "2025-11-01T02:36:56.78063"
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}
334328
}

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