Merge pull request #719 from nf-core/update_doc

update doc

Author: rannick

CHANGELOG.md

@@ -89,6 +89,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - Replaced local `FUSIONREPORT` and `FUSIONREPORT_DOWNLOAD` with `FUSIONREPORT_DETECT` and `FUSIONREPORT_DOWNLOAD` from nf-core [#703](https://github.com/nf-core/rnafusion/pull/703)
 - Updated arriba to v2.5.0 [#693](https://github.com/nf-core/rnafusion/pull/693)
 - Update logo [#715](https://github.com/nf-core/rnafusion/pull/715)
+- Slight documentation update [#719](https://github.com/nf-core/rnafusion/pull/719)
 - Replaced local `STARFUSION_BUILD` for module from nf-core [#709](https://github.com/nf-core/rnafusion/pull/709)
 - Modified `test_build` profile to use a reduced version of Pfam and Dfam files [#733](https://github.com/nf-core/rnafusion/pull/733)
 - Updated the documentation to reflect the changes done in this release [#741](https://github.com/nf-core/rnafusion/pull/741)

docs/usage.md

@@ -15,7 +15,7 @@ The pipeline is divided into two parts:
 
 2. Running the analysis
 
-- Supported tools: `Arriba`, `FusionCatcher`, `STAR-Fusion`, `StringTie` and `CTAT-SPLICING`
+- Supported tools: `Arriba`, `FusionCatcher`, `STAR-Fusion`, `StringTie` and `CTAT-SPLICING` (the last two are not supported by fusion-report and `StringTie` can be seen as more of an assembly tool that requires manual investigation).
 - QC: `Fastqc`, `MultiQC`, and `Picard CollectInsertSize`, `Picard CollectWgsMetrics`, `Picard Markduplicates`
 - Fusions visualization: `Arriba`, `fusion-report`, `FusionInspector`, and `vcf_collect`