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1 parent 8615a86 commit 0a675cfCopy full SHA for 0a675cf
bin/filter_gtf.py
@@ -30,7 +30,7 @@ def tab_delimited(file: str) -> float:
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def filter_gtf(fasta: str, gtf_in: str, filtered_gtf_out: str, skip_transcript_id_check: bool) -> None:
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"""Filter GTF file based on FASTA sequence names."""
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if tab_delimited(gtf_in) != 8:
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- raise ValueError("Invalid GTF file: Expected 8 tab-separated columns.")
+ raise ValueError("Invalid GTF file: Expected 9 tab-separated columns.")
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seq_names_in_genome = extract_fasta_seq_names(fasta)
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logger.info(f"Extracted chromosome sequence names from {fasta}")
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