Fix #799

Author: drpatelh

CHANGELOG.md

@@ -10,6 +10,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [[#764](https://github.com/nf-core/rnaseq/issues/764)] - Test fails when using GCP due to missing tools in the basic biocontainer
 - [[#791](https://github.com/nf-core/rnaseq/issues/791)] - Add outputs for umitools dedup summary stats
 - [[#798](https://github.com/nf-core/rnaseq/issues/798)] - Decompress transcript fasta error
+- [[#799](https://github.com/nf-core/rnaseq/issues/799)] - Issue with using `--retain_unpaired` with the `FASTQC_UMITOOLS_TRIMGALORE:TRIMGALORE` module
 - [[#802](https://github.com/nf-core/rnaseq/issues/802)] - `--bam_csi_index` error generated if `--skip_alignment` specified
 - Updated pipeline template to [nf-core/tools 2.3.2](https://github.com/nf-core/tools/releases/tag/2.3.2)
 

modules.json

@@ -103,7 +103,7 @@
                 "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
             },
             "trimgalore": {
-                "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
+                "git_sha": "85ec13ff1fc2196c5a507ea497de468101baabed"
             },
             "ucsc/bedclip": {
                 "git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"