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CHANGELOG.md

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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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# 3.18.0dev - xxxx-xx-xx
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# 3.18.0 - 2024-12-19
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### Credits
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Special thanks to the following for their contributions to the release:
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- [Caitlin Winkler](https://github.com/oligomyeggo)
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- [Jonathan Manning](https://github.com/pinin4fjords)
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- [Maxime Garcia](https://github.com/maxulysse)
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- [Siddhartha Bagaria](https://github.com/siddharthab)
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### Enhancements & fixes
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- [PR #1459](https://github.com/nf-core/rnaseq/pull/1466) - Remove reference to unused "skip_sample_count" value in email templates
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- [PR #1471](https://github.com/nf-core/rnaseq/pull/1471) - Fix prepare_genome subworkflow for sortmerna
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- [PR #1473](https://github.com/nf-core/rnaseq/pull/1473) - Bump STAR modules
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- [PR #1474](https://github.com/nf-core/rnaseq/pull/1474) - Bump versions to 3.18.0
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## Parameters
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| Old parameter | New parameter |
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| ------------- | --------------------- |
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| | `--skip_linting` |
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| | `--extra_fqlint_args` |
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| | `--umi_dedup_tool` |
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### Software dependencies
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